Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1909 ATGTCTATCACGATGGCACAATCATGCCTACTCTTTCAACATTCACTCTTATACACCAAAACCAAATTTCCAATTATCTCAAATTCTGTTAAGCCCTTCAAGCTACAAAACCCATCATCATTTAACAATAATTCTTCAACATTTTCGTGCTCTCTCCCTCTCACTAGTAGGAGAAGAACCCGCCATTCTTCTTTTCTCACATTTGCTGGTGATGAAGGGAATTCCGAGGATCCATATAAGAGTTTGAATGTCTTCATTAGTAATTTGCCTGATGGTCTTAGGCTTGGGAAATTGTCTATGCTTTTTGAGGAGGTTGGGATTGTAGATGGTGCTTCGCTAAATGCTGGTAATGTTGATGGAAAAAGTTTTGCAAGTGTAACTATGAGTACAGTTGAAGAAGTTGAGAAGGCTATCGAGAAATTCAATGGCTATGTATTAAATGGAAAATTGTTGACAGTTAGTAGGGAGAAACCAAAGCCTCGTCGTGCCTATTATAGTGCCCATTTTTATATCAGCGTTAGCAACTTGCCGAAGGATGTTGACAGTGGTCGCTTGGAGGAAATTTTCAGCAAATATGGTCGGGTTTATAATGTTCGGATAGACTATAACGAACAGTTGGATGAATCAACTGGCTATCTTACAATGACCAATGAGACTCAAATGAATAATGCCATTGCTGCTCTTGACGGTCAGAGCTTGGACGGGAAGGTATTCAGATTGTTTGTTGAAACTTTAGAGACCAAGAAATGA 750 0.392 MSITMAQSCLLFQHSLLYTKTKFPIISNSVKPFKLQNPSSFNNNSSTFSCSLPLTSRRRTRHSSFLTFAGDEGNSEDPYKSLNVFISNLPDGLRLGKLSMLFEEVGIVDGASLNAGNVDGKSFASVTMSTVEEVEKAIEKFNGYVLNGKLLTVSREKPKPRRAYYSAHFYISVSNLPKDVDSGRLEEIFSKYGRVYNVRIDYNEQLDESTGYLTMTNETQMNNAIAALDGQSLDGKVFRLFVETLETKK* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1909 249 Gene3D - 170 246 IPR012677 -
Tpr1g1909 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 240 IPR000504 GO:0003723
Tpr1g1909 249 PANTHER OS02G0815200 PROTEIN 66 242 - -
Tpr1g1909 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 158 IPR000504 GO:0003723
Tpr1g1909 249 SUPERFAMILY RNA-binding domain, RBD 81 240 IPR035979 GO:0003676
Tpr1g1909 249 SMART rrm1_1 83 154 IPR000504 GO:0003723
Tpr1g1909 249 SMART rrm1_1 170 241 IPR000504 GO:0003723
Tpr1g1909 249 PANTHER RIBONUCLEOPROTEIN 66 242 - -
Tpr1g1909 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 237 IPR000504 GO:0003723
Tpr1g1909 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 151 IPR000504 GO:0003723
Tpr1g1909 249 Gene3D - 78 162 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1909 Tpr-Chr1 19103877 19105613 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1909 83 236 Eukaryotic Initiation Factors Gene Family AT1G22760 26.286 2.11e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1909 - - gmx:100804984 168.703