Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1908 ATCGACTACCAAAACTCATTCATTTCAAACTCTGCTAAGTCCTTCAAGATACAAAACCCAACACACAATTCTTCAAGGTTTTCACAATCTATTTCTCTCACTGTTAGTAACAGAAGAGCACGTGATTCTTCTTTGGTTACATTTGTTGCACAGACAAGTGATTGGACTCAGGAAGAGAAAGAAGATGGAGCATGGGAGAATCAAGGTGAAACTGCTTGGGTTGGTGAAACTGAAACTGTTGAGAGTGATGGTGATGTTGGGAGATTTGAAGAATCTTCTGAAGATTTGAAGATTTTTGTTGGGAATTTGCCTTTTGATGTTGATAGTGAGAGATTGGCTGAGCTTTTTGAGCAGGCTGGGACTGTTGAAGTTGCTGAGGTAATTTATAACAGGGAGACTGACCGTAGCCGTGGGTTTGGATTTGTAACAATGAGTACAGCTGAAGAAGTTGAGAGGGCTGTGAACAAGTTCAGTCGCTATGAATTAGATGGAAGATCATTGACTGTTAATAAGGCCGCTCCAAGAGGAGCACCACGGCCTGAGCGCCCACCACGTTCCTTTGATTCTGGTCCTCCTGGTCTAAGACTCTACGTTGGTAACTTGCCATGGGATGTTGACAATTCTAGCTTGGAACAACTTTTCAGCGAACATGGTAAGGTTCAGAATGCTCGGGTAGTCTATGACAGAGAGACCAGTCGATCACGTGGTTTTGGCTTTGTTACAATGGCGAGTGAGGATGATGTGAATGAAGCCATTGCTGCTCTTGACGGTCAGGAATTTAACGGGAGGGCAATCAGAGTGAATGTTGCTGAGGAAAGACCCAGGCGCTAA 831 0.4404 IDYQNSFISNSAKSFKIQNPTHNSSRFSQSISLTVSNRRARDSSLVTFVAQTSDWTQEEKEDGAWENQGETAWVGETETVESDGDVGRFEESSEDLKIFVGNLPFDVDSERLAELFEQAGTVEVAEVIYNRETDRSRGFGFVTMSTAEEVERAVNKFSRYELDGRSLTVNKAAPRGAPRPERPPRSFDSGPPGLRLYVGNLPWDVDNSSLEQLFSEHGKVQNARVVYDRETSRSRGFGFVTMASEDDVNEAIAALDGQEFNGRAIRVNVAEERPRR* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1908 276 CDD RRM_HP0827_like 97 174 - -
Tpr1g1908 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 266 IPR000504 GO:0003723
Tpr1g1908 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 167 IPR000504 GO:0003723
Tpr1g1908 276 PANTHER OS02G0815200 PROTEIN 6 276 - -
Tpr1g1908 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Tpr1g1908 276 SUPERFAMILY RNA-binding domain, RBD 190 275 IPR035979 GO:0003676
Tpr1g1908 276 SMART rrm1_1 97 170 IPR000504 GO:0003723
Tpr1g1908 276 SMART rrm1_1 195 268 IPR000504 GO:0003723
Tpr1g1908 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
Tpr1g1908 276 CDD RRM_HP0827_like 195 271 - -
Tpr1g1908 276 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC-RELATED 6 276 - -
Tpr1g1908 276 Gene3D - 180 276 IPR012677 -
Tpr1g1908 276 Gene3D - 36 179 IPR012677 -
Tpr1g1908 276 SUPERFAMILY RNA-binding domain, RBD 93 186 IPR035979 GO:0003676
Tpr1g1908 276 MobiDBLite consensus disorder prediction 168 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1908 Tpr-Chr1 19094056 19096470 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1908 98 276 Eukaryotic Initiation Factors Gene Family AT3G16380 32.065 1.82e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1908 - - gmx:100804984 329.331