Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1905 ATGGCAGATTACATGGAAAGAGAACCACCACGGATGATCACTTTAATGTTAAAAGCGTGCGTATTACTTACCTTGTTGCCAATTATCTGCATTAAACATGCCAATTCGGAAAATACACTTGTTTCAAGAGAAACTGTAGAAATTAATGAAAATCCAGGTTTTATAAGCATTGATTGTGGATCAACAACCGATTACTTGCAAGAGGATACCGGAATTTGGTATAAAACAGACAAAGGATTTGTGGAAACAGGAGAGAATATTCATGTTAACTTAAACTTTGATTACATTGGGAAACAATTGACCACATTGAGATGCTTTCCAGATGGAGATAGAAATTGCTATACGTTGAAACCAAAAGAGGGAAAAAATAATAAATATCTCATTAGGGCTTTATTTTCTTATGGTAATTATGATGGCAAAAATGAAACCCAATCTTTTGACCTGCATCTTGGAGTCAATCTTTGGAGAAAAATTAATTATACAACTAACGATGATTACCATGTTGTGGAGATCATTCACACTCCTTCAACTGACACTATAAATGTGTGCCTTGTAAAGACTGGTCCAACAATCCCTTGCATTTCTTCATTGGAATTGAGACTTTTGAACAATTCAATTTATCAAAATGATGATATAGTCTCCACAAATGAAAATGCTCCACTACCTCTTTTGCAACTTGATGTTAGGGTTGATGTTGGATTCTCGCCATGCACTTCTTCTTCGTCCAAGTATAATGACGATGTGTATGATCGGATGTGGTCGTACGACTGTGGTTTTTCCGCCTACAATCAAACGGACGAGAAACTTTCAAATGGAAAAAAAAGAAAAATAAATATCACTCTCAACTCACAAAATGTACTATCTCAGCCACTAGTTCTTGATTACTTGAGGCCAGTTACTCTCAACTTCAAAACTCAAAATGGTGTTTTGTTTAACATTAGCGCAACCTCAGATTCAGATGCTCCTCCTATACTCAATGCTTTCGAGATCTATCGATTGATAACCGAACTTAATTCACTGACACACGCTCAAGATGTTGATGCAATCATGGATATCAAAAGCTCCTACAAGATCGATAGATTGAGTTGGCAAGGAGACCCTTGTCTTCCTAAGCAATATGCTTGGGAAGGTCTAGTTTGTGAAGGTGATATCATCCCAAGGATCACATCTTTGAACTTGAGCTCAAGCAAACTGACAGGGGAGATAAATATATCGCTCTTATATCTTTCAGAATTAGAATTGTTGGATTTGTCACATAATAATTTGGAAGGACCTCTCCCAGATTTTTTGGCACAGTTGCCAAAGTTAAAAGTTCTCAATCTAACGGGAAACAAGCTTTCGGGTCGAATTCCAAATGCTCTCAAGCAAAAAGCAGATGGAACTTTGCAATTAAGCGTGTCCGACAATCCTAATATTTGTACATCCGGTTCATGCAAAAAGAAGAAGTTTGTTGTACCACTTATTGCATCAATTTCATCATTAATTATTGTAATCCTCTTAATCTCTCTTGGATTTTGGACATTCAAAAGACTAGAAGTTGCACATTCTAACCCTAAGAAGAGAGGTTCATTTGTATCAAAACATATAGCATTCAGTTACAGTGAAATTCTGAATATTACTGACAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTATCTTGGTGTTCTGCAAAATCACACCCAAGTTGCGGTTAAGATACTTTCACCATCTTCCATGCAAGGTTATAAGGAATTTCAATCAGAGGTACAACTTCTATCAGTTGTTCATCATAGGAATTTGGTCTCTCTTATTGGGTATTGCAATGAAGGTGAAATCAAAGCATTGATTTATGAATACATGGCCAATGGAAATCTCCATCAACATTTATTTGTGGAAAATTCAAATATCTTAACATGGAATGAAAGACTAAACATTGCAGTTGATGCAGGACATGGATTGGATTATCTGCATAATGGATGTAAACCACCTATAATGCATAGAGATTTGAAGCCTTCCAACATATTACTTGATGAAAACATGGATGCTAAGATTGCCGATTTTGGTCTAAGTAGAACTTTTACTAATGATGATGATTCTCATGTATCCACACGTCCTGCCGGTACATTTGGTTATGTTGATCCAAAATTACAGAGATTTGGAAAGGCAACTAAGAAGACTGATATCTACAGTTTTGGAATAATTCTCTTTGAGTTGATCACTGGCAGAAAAGCACTAGTAAAAGTATCTAATGAATACATTCACATACTTCAATGGGTTATTCCCATTATTGAGGGAGGAGATATTCAAAATATTGTTGATCCAAAGTTGCAGGGAGAATTTAGCATCAATTCAGCATGGAAAGCTATAGAGATTGCCATGTCATGCACTTCACCAAATGCAGTTGAAAGGCCAGACATGAGCCAAATATTAGCAGATTTAAAAGAATGTTTATCTTTGGACATAGTTCAAAGAAACCCTCAAAACCCAAATGCAATTGAAGAATTGGTTTCAGTGGCTACTATATCAGAAACCACTCTTTTAGCTAGATAA 2541 0.3593 MADYMEREPPRMITLMLKACVLLTLLPIICIKHANSENTLVSRETVEINENPGFISIDCGSTTDYLQEDTGIWYKTDKGFVETGENIHVNLNFDYIGKQLTTLRCFPDGDRNCYTLKPKEGKNNKYLIRALFSYGNYDGKNETQSFDLHLGVNLWRKINYTTNDDYHVVEIIHTPSTDTINVCLVKTGPTIPCISSLELRLLNNSIYQNDDIVSTNENAPLPLLQLDVRVDVGFSPCTSSSSKYNDDVYDRMWSYDCGFSAYNQTDEKLSNGKKRKINITLNSQNVLSQPLVLDYLRPVTLNFKTQNGVLFNISATSDSDAPPILNAFEIYRLITELNSLTHAQDVDAIMDIKSSYKIDRLSWQGDPCLPKQYAWEGLVCEGDIIPRITSLNLSSSKLTGEINISLLYLSELELLDLSHNNLEGPLPDFLAQLPKLKVLNLTGNKLSGRIPNALKQKADGTLQLSVSDNPNICTSGSCKKKKFVVPLIASISSLIIVILLISLGFWTFKRLEVAHSNPKKRGSFVSKHIAFSYSEILNITDNFKTIIGEGGFGKVYLGVLQNHTQVAVKILSPSSMQGYKEFQSEVQLLSVVHHRNLVSLIGYCNEGEIKALIYEYMANGNLHQHLFVENSNILTWNERLNIAVDAGHGLDYLHNGCKPPIMHRDLKPSNILLDENMDAKIADFGLSRTFTNDDDSHVSTRPAGTFGYVDPKLQRFGKATKKTDIYSFGIILFELITGRKALVKVSNEYIHILQWVIPIIEGGDIQNIVDPKLQGEFSINSAWKAIEIAMSCTSPNAVERPDMSQILADLKECLSLDIVQRNPQNPNAIEELVSVATISETTLLAR* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1905 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 661 673 IPR008271 GO:0004672|GO:0006468
Tpr1g1905 846 PANTHER LRR RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN 44 261 - -
Tpr1g1905 846 PANTHER LRR RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN 267 842 - -
Tpr1g1905 846 Pfam Protein tyrosine and serine/threonine kinase 543 809 IPR001245 GO:0004672|GO:0006468
Tpr1g1905 846 ProSiteProfiles Protein kinase domain profile. 541 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1905 846 SMART serkin_6 541 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1905 846 PRINTS Leucine-rich repeat signature 412 425 - -
Tpr1g1905 846 PRINTS Leucine-rich repeat signature 433 446 - -
Tpr1g1905 846 PANTHER OS07G0107800 PROTEIN-RELATED 44 261 - -
Tpr1g1905 846 PANTHER OS07G0107800 PROTEIN-RELATED 267 842 - -
Tpr1g1905 846 Pfam Malectin-like domain 57 258 IPR024788 -
Tpr1g1905 846 Pfam Malectin-like domain 271 332 IPR024788 -
Tpr1g1905 846 Gene3D Transferase(Phosphotransferase) domain 1 617 830 - -
Tpr1g1905 846 ProSitePatterns Protein kinases ATP-binding region signature. 547 569 IPR017441 GO:0005524
Tpr1g1905 846 SUPERFAMILY L domain-like 371 456 - -
Tpr1g1905 846 Pfam Leucine rich repeat 386 446 IPR001611 GO:0005515
Tpr1g1905 846 Gene3D Ribonuclease Inhibitor 344 474 IPR032675 -
Tpr1g1905 846 Gene3D Phosphorylase Kinase; domain 1 524 616 - -
Tpr1g1905 846 CDD STKc_IRAK 547 812 - -
Tpr1g1905 846 SUPERFAMILY Protein kinase-like (PK-like) 522 810 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1905 Tpr-Chr1 19052805 19060700 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1905 53 814 Receptor kinase-like Gene Family AT1G07560 41.998 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Tpr1g1905 PK_Tyr_Ser-Thr 7.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1905 - - mtr:MTR_8g015040 869.381