Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1899 ATGGCAGATGCAGAAAGTCCAGCTGGTGGAAGCCACGAAAGTGGTGGCGAACAGAGTCCACATGGTTCTTCTTCTGCTGCGCGTGAACAAGATCGTTACTTGCCTATAGCTAATATAAGCAGAATCATGAAAAAAGCTTTACCTTCAAATGGAAAAATTGCTAAGGATGCTAAAGATACCATGCAAGAATGTGTTTCTGAATTCATCAGTTTTATTACCAGCGAGGCAAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACCATTAATGGTGATGATTTGTTATGGGCTATGGCTACTTTAGGATTTGAAGATTATATAGAACCACTTAAGGTGTACCTAGCAAGGTACAGGGAGTTAGAGGGTGACAGTAAAGGATCTGTTAGAAACGATGGATCTGGTAGACGGGATCAAGTTGGTCATCCAGGTCAAAATGCTCAGTTTGTTCATCAGGGTTCTTTGAACTATATTGATTCTCAGGTGCATCCACAACATCTGGTTATGCCTTCAATGCAAAACCATGAATAG 525 0.4114 MADAESPAGGSHESGGEQSPHGSSSAAREQDRYLPIANISRIMKKALPSNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYRELEGDSKGSVRNDGSGRRDQVGHPGQNAQFVHQGSLNYIDSQVHPQHLVMPSMQNHE* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1899 174 MobiDBLite consensus disorder prediction 1 30 - -
Tpr1g1899 174 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tpr1g1899 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 154 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tpr1g1899 174 SUPERFAMILY Histone-fold 30 155 IPR009072 GO:0046982
Tpr1g1899 174 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Tpr1g1899 174 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Tpr1g1899 174 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Tpr1g1899 174 MobiDBLite consensus disorder prediction 122 141 - -
Tpr1g1899 174 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 154 - -
Tpr1g1899 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Tpr1g1899 174 Gene3D Histone, subunit A 19 153 IPR009072 GO:0046982
Tpr1g1899 174 MobiDBLite consensus disorder prediction 12 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1899 Tpr-Chr1 18984203 18988281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1899 4 168 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.452 7.48e-76 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tpr1g1899 CBFD_NFYB_HMF 6.4e-29 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1899 K08065 - gmx:100815883 292.737