Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1890 ATGGAACAAGAAGAGCACGAAGTTTACGGTGCAGACATTCCTGATGAAGAGGTTGACATGGACGCTGACATAGATGCTGAACAACAAGAAGGAGATGAAGAACTCGCTTCCAATCACACCACCAAGGAATTGGAAGACATGAAGAAGAGGCTGAAAGAGATCGAGGAAGAAGCTAGCGCTCTTCGCGAAATGCAAGCTAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGATCCTGCTGGGTCTTCTGCAACTCAAGCTGAAAAGGAGGAAGTTGATGCTCGATCGATCTATGTCGGTAATGTTGACTACGCCTGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGTACTGTGAACAGAGTGACAATACTGACAGACAAATTTGGCCAACCGAAAGGATTTGCTTACGTAGAATTTGTTGAGGTAGATGCTGTTCAGAATGCTCTCATTTTAAATGAAACTGAATTGCATGGCCGACAGCTAAAGGTGTCTGCGAAACGTACAAATGTGCCTGGATTGAAGCAGTATTTTGGTAGAAGACCTGCTGGATTCCGAGCAAGGAGGCCTTTCATGCCTTCACCATTCTATCCACCATATGCTGCTTACGGAAGGGTTCCGAGATATAGAAGACCAACCCGATACCGGCCATACTAG 660 0.4591 MEQEEHEVYGADIPDEEVDMDADIDAEQQEGDEELASNHTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDPAGSSATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALILNETELHGRQLKVSAKRTNVPGLKQYFGRRPAGFRARRPFMPSPFYPPYAAYGRVPRYRRPTRYRPY* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1890 219 MobiDBLite consensus disorder prediction 1 88 - -
Tpr1g1890 219 CDD RRM_II_PABPs 95 166 - -
Tpr1g1890 219 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 170 IPR000504 GO:0003723
Tpr1g1890 219 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 218 - -
Tpr1g1890 219 MobiDBLite consensus disorder prediction 32 70 - -
Tpr1g1890 219 Coils Coil 37 71 - -
Tpr1g1890 219 MobiDBLite consensus disorder prediction 1 31 - -
Tpr1g1890 219 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 164 IPR000504 GO:0003723
Tpr1g1890 219 SMART rrm1_1 95 166 IPR000504 GO:0003723
Tpr1g1890 219 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 218 - -
Tpr1g1890 219 SUPERFAMILY RNA-binding domain, RBD 84 191 IPR035979 GO:0003676
Tpr1g1890 219 Gene3D - 12 174 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1890 Tpr-Chr1 18869997 18874518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1890 95 166 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 7.78e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1890 K14396 - gmx:100527545 363.614