Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1884 ATGTATTCAGGAGTAATGGAAGGAAACACAAGATGGAGTGTAATAGAAGAAGATAGATGGAGAAAAGGACCTTGGACTTCTGAGGAAGACAAATTGCTCATTGAATATGTCAAGCTTCATGGTGAAGGAAGATGGAACTCTGTTTCTAGGCTTACAGGACTGAGAAGAAATGGGAAAAGTTGTAGATTGAGATGGGTGAACTACCTAAGACCAGACCTTAAGAAGGGTCATATAACCCCACAAGAAGAAACCATAATCCTAGAGCTTCATGCTAGGTGGGGAAATAGGTGGTCAACAATTGCAAGAAGTTTACCTGGAAGAACGGACAATGAAATAAAAAACTATTGGAGGACTCATTTTAAGAAAAAGACGAAAAGCCCTTCCGATGATGCTGAAAAGGCGAAAAAACGTTCTTTCAAGAGGCAGCAACAACAACAGTTGAAGCATCAACAGCAACAGATCCAGCAGCAACAATTTCAATTCAATTTAGACATGAAAGGGATCATAGACTTGTTGCTTGATGAAAATGAGTACTATAACGTGCCTTCTACATCTCAAGAAACACAAGAAATGGTTTCCATGTATGCAGATACACCAGAACAAAAGGGATACTTTGACTCTATGGTCAATGATAATAATGGTAATGTCTATGCACAAGAGTCTTCAAATGAAGAAATTTTGTGGGATGGACTTTGGAACTTAGATGATGTCCTTGGAAATTCAATGCAGCTAATGCTACAAGCAAAGCCAGCCAATGTGCACAATTTAGTTACTCCCTTTTGTTAA 786 0.3868 MYSGVMEGNTRWSVIEEDRWRKGPWTSEEDKLLIEYVKLHGEGRWNSVSRLTGLRRNGKSCRLRWVNYLRPDLKKGHITPQEETIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKSPSDDAEKAKKRSFKRQQQQQLKHQQQQIQQQQFQFNLDMKGIIDLLLDENEYYNVPSTSQETQEMVSMYADTPEQKGYFDSMVNDNNGNVYAQESSNEEILWDGLWNLDDVLGNSMQLMLQAKPANVHNLVTPFC* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1884 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 69 IPR017930 -
Tpr1g1884 261 MobiDBLite consensus disorder prediction 120 153 - -
Tpr1g1884 261 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Tpr1g1884 261 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Tpr1g1884 261 SMART sant 74 122 IPR001005 -
Tpr1g1884 261 SMART sant 21 71 IPR001005 -
Tpr1g1884 261 CDD SANT 24 69 IPR001005 -
Tpr1g1884 261 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Tpr1g1884 261 MobiDBLite consensus disorder prediction 120 139 - -
Tpr1g1884 261 Gene3D - 22 74 - -
Tpr1g1884 261 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 249 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tpr1g1884 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Tpr1g1884 261 CDD SANT 79 120 IPR001005 -
Tpr1g1884 261 PANTHER MYB TRANSCRIPTION FACTOR 1 249 - -
Tpr1g1884 261 Coils Coil 140 160 - -
Tpr1g1884 261 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Tpr1g1884 261 Gene3D - 79 160 - -
Tpr1g1884 261 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1884 Tpr-Chr1 18805828 18807466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1884 17 261 MYB Transcription Factor Family AT3G24310 56.154 3.80e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g1884 Myb_DNA-binding 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1884 K09422 - gmx:100813935 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1884 1 18805828 18807466 Tpr1g1884 1 18805828 18807466 ECH