Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1878 ATGTCTTCCTCTCCACCACCTCTAGTGAATAATCCTCCTTCCACCACAATCTCTCAAGAACAACCGACACAATCCTCATCACCACATCCCTCATCCTCATCATCCCCCACCACAATCTCTCAAGAACAACAGACAGGAGCACCTTCCTCCTCCACCACAACAAACATCATCACACTAACCTCTCAAGAACAGCAGCAGCAGCAAGATCCTCATCCCTCATCCTCATCATCCCCCACCACAATCTCTCAAGAACAACAGACAGGAGCACCTTCCTCCTCCACCACAACAAACATCATCACACTAACCTCTCCAGAACAGCAGCAGCAGCAGCAGCAAGATCCTCAACAAATCATCAGGATAGAGAACCCCCAACATCAAAATTGGTGGCAAAGAACCAGACCATATGCAATAGTCATCCTATTGCAATTCCTGTTTGCCATAATGAATTTCACAACAAAGCTGGCAATGAACAACGGGATGAGCAACTATGTGTTCGTTGCATATCGCAACATCCCTGCGTGTCTGGTCTTTGCACCATTTGCGGTTTATCGTGAAAGGGATCGATGGTCACAAATGACATGGTCAGTATTCAGGAAGATATTGGCGCTTAGTGTGCTAGGACCTATTATGGACCAAGATCTATACTTCTTAGGGATGAAGTACTCCACGGCAACCCTAGCATCAGCATTAGGCAATACTCTTCCTGGCATGTCGTTTATTTTGGCTTGTGTTACTGGGAGAGAAACTATAAACATAACTGCTAAACCAAGCCAAGCAAAAATATTGGGCACAATCATATCTGTTTTAGGTGCCTTGGTGATGACTCTAGTTAAAGGTCCAGTCTTATTTGGGACGGTTGGAGCTGATAGCCATAGTCATCACCATAATGGTTTCCATACAATTCTTGGAGTGGTGTTCATCTTGTTATCAACTCTAAGCAATGCTGCTTCAAACATCCTCCAGACCATCACACTAGAAGAGCTGAACCTACCACTCACAGTTACTTCACTGATGCTTCTATTTGGCTCAATTGAAGCAATATTGGTGGCTGTGCTTATGAATAAAACTACATATTATTCAGTTTGGTATGTTTTTCAGTGGGATATCAAATTATTGACTGCTATTTACGCGGGTATATTTTGCTCGGGGCTAGGTTTTTACTTGCGAGGACAAGTAATGCAAGCTAGAGGTCCCGTATTCGGAACCATGTTTAATCCCGTGTGCATGATCTTGGTCGCTATGTCAGGCTACTTCTTTCTTGACGAGCAACAATTCTTAGGAAGGGTGATAGGTGCACTAATCATCTGTTCGGGTCTTTACTTTGTTGTATGGGGGACAAACAAAGACAACATACTTAGGCGCCAAGCGCAAGAGAATGCAAATGCAAATGCGGTGGCAAATCCATAG 1407 0.4407 MSSSPPPLVNNPPSTTISQEQPTQSSSPHPSSSSSPTTISQEQQTGAPSSSTTTNIITLTSQEQQQQQDPHPSSSSSPTTISQEQQTGAPSSSTTTNIITLTSPEQQQQQQQDPQQIIRIENPQHQNWWQRTRPYAIVILLQFLFAIMNFTTKLAMNNGMSNYVFVAYRNIPACLVFAPFAVYRERDRWSQMTWSVFRKILALSVLGPIMDQDLYFLGMKYSTATLASALGNTLPGMSFILACVTGRETINITAKPSQAKILGTIISVLGALVMTLVKGPVLFGTVGADSHSHHHNGFHTILGVVFILLSTLSNAASNILQTITLEELNLPLTVTSLMLLFGSIEAILVAVLMNKTTYYSVWYVFQWDIKLLTAIYAGIFCSGLGFYLRGQVMQARGPVFGTMFNPVCMILVAMSGYFFLDEQQFLGRVIGALIICSGLYFVVWGTNKDNILRRQAQENANANAVANP* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1878 468 MobiDBLite consensus disorder prediction 13 95 - -
Tpr1g1878 468 SUPERFAMILY Multidrug resistance efflux transporter EmrE 168 277 - -
Tpr1g1878 468 SUPERFAMILY Multidrug resistance efflux transporter EmrE 362 447 - -
Tpr1g1878 468 MobiDBLite consensus disorder prediction 1 95 - -
Tpr1g1878 468 PANTHER WAT1-RELATED PROTEIN 130 453 - -
Tpr1g1878 468 Pfam EamA-like transporter family 135 275 IPR000620 GO:0016020|GO:0016021
Tpr1g1878 468 Pfam EamA-like transporter family 302 443 IPR000620 GO:0016020|GO:0016021
Tpr1g1878 468 PANTHER WAT1-RELATED PROTEIN 130 453 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1878 Tpr-Chr1 18749491 18752182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1878 120 449 Nodulin-like Gene Family AT2G37460 44.144 2.79e-92 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1878 - - cam:101496299 345.125