Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1870 ATGGTAATCATGTTATTTACATTTCCTTTATATCACTTCTCACAGGATGAAATTTCAAGCCCTCTCAGCGCTCGAATTTTCGAGCTTTGTAACCCTGAATTATTTCCAGAAGCTTTGCAGAATTCTGAAGTTACATCAAGCTCAAATTGTTGCTATGAAGAGAATTCATCATATGCAACAAATATATTAGATGTAGAAACTAAGTTCAATAATAGCAATAGCAACAATAATAGCAATAGCACCGCCGCCACCAACACCAACAACAATAACACCAACAACTCCAACAATAGCAATAATCTTTCTGTTATCTTTGATTCACAAGAAGAAATCGACAATGACATTTCGGCATCAATAGATTTCTCACTCTCACCATCATTCAATGTTCCTTCATTCTTACCAGTCACATCATCACAGCAAGAACAATTTGATTTCAATTCTCATGTTCAACAACTAACATCATGTTCATCTGTTGAAGGATTCACACAGTTTCATAATCCAAATGATTCAGTTGCACCTCTTTTGGGAACTTCATTATCATTACCACCTGTTTTTGAAGAAGATTGCATAACTTCTGTACCTTCTTATGTTCCTTTGAACCCTTCTTCTCCTTCTTGCAATTATCTTAGTCCAGCTGGAATGGCGTCTTATATGCCGCCTCCGCCTGGTTCTCTTGCTACTTCTTTGTCTGCTGATAGTGCTGGTTTGTTTGGTGGAAATATGCTTCTTGGTTCTGAACTTCAAACTCAAGAACTTGATTATCAAGGAGATAATGGTAGAATGTATTGTCCTGATCCTATTCAGAGGGTGTTTAATCCTCCTGATCTTCAGGCACTTAATACTGAGAATCAACAACTAGTAGCTGGTTCTGGTAGTTCTGCAACTTTGACACCAGAAATCTCAAACTTGGAGGACTCAACTTTTAAGGTTGGAAAACTTTCTGTTGAACAAAGGAAAGAAAAGATTCACAGATATATGAAGAAAAGAAATGAAAGAAACTTCAGTAAGAAAATTAAGTATGCATGCCGAAAAACTTTGGCTGATAGCCGACCTCGAGTTAGAGGAAGATTTGCAAAGAATGATGATTTTGGAGATGCACAAAGAACTGCTAGTGGCAATCATGAAGAAGAAGATGAAGAAGAGGTAGCTGTGAAAGAGGAAGATGATATGGTTGATTCCTCAGATATATTTGCTCATATAAGTGGAGTGAATTCCTTCAAATGCAACTATTCTATCCAATCATGGATTTGA 1248 0.3686 MVIMLFTFPLYHFSQDEISSPLSARIFELCNPELFPEALQNSEVTSSSNCCYEENSSYATNILDVETKFNNSNSNNNSNSTAATNTNNNNTNNSNNSNNLSVIFDSQEEIDNDISASIDFSLSPSFNVPSFLPVTSSQQEQFDFNSHVQQLTSCSSVEGFTQFHNPNDSVAPLLGTSLSLPPVFEEDCITSVPSYVPLNPSSPSCNYLSPAGMASYMPPPPGSLATSLSADSAGLFGGNMLLGSELQTQELDYQGDNGRMYCPDPIQRVFNPPDLQALNTENQQLVAGSGSSATLTPEISNLEDSTFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDAQRTASGNHEEEDEEEVAVKEEDDMVDSSDIFAHISGVNSFKCNYSIQSWI* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1870 415 MobiDBLite consensus disorder prediction 352 388 - -
Tpr1g1870 415 Pfam CCT motif 317 359 IPR010402 GO:0005515
Tpr1g1870 415 MobiDBLite consensus disorder prediction 352 374 - -
Tpr1g1870 415 ProSiteProfiles CCT domain profile. 317 359 IPR010402 GO:0005515
Tpr1g1870 415 PANTHER CCT MOTIF FAMILY PROTEIN 15 415 - -
Tpr1g1870 415 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 15 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1870 Tpr-Chr1 18623584 18626899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1870 297 361 C2C2-CO-like Transcription Factor Family AT5G24930 41.538 4.67e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr1g1870 CCT 5.5e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1870 - - aprc:113871720 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1870 1 18623584 18626899 Tpr1g1870 1 18623584 18626899 ECH