Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1863 ATGGATTCGGATCAGGGAAAGCTTTTCATCGGTGGGATTTCATGGGATACTAATGAGGAGAAGCTGAAGGAGCATTTCAGCAATTATGGTGATGTTTTGAACACTTCAGTTATGAGAGAGAAGAACACTGGAAAACCTAGAGGCTTTGGTTTCGTTGTTTTTTCAGATCCTTCTGTTCTTGATAGGGTTCTTGAAGACAAGCATGTTATTGATGGCAGAACGGTTGATGCCAAGAGGGCGTTCTCAAGAGAAGATCAACAAATTTCTGGTAATTCGAGAACTGGAAACTCCAATTCTGGTATGAATTCGGGTAATGGTGGGAATATGAGGACAAAAAAGATATTTGTTGGAGGGTTACCTCCCACTCTGGCTGAAGAAAAATTTCGTCAGTACTTTGAGGCTTATGGACTTGTAACTGATGTTGTAGTCATGTATGACCAGAATACTGGACGACCACGAGGTTTTGGGTTTATTACATTTGATACTGAGGAGGCAGTTGATAGGGTTTTGCACAAGACATTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCACTTCCAAAGGATGCCAATCCAGGTGCAAATAGCCGAATGGGTGGTGCTGGAGGTGGTGGTGCTGGAATGGGTGGTTATCCAGGGTACGGGGCTTCTGGTGGCAACCAAAATGCATATGATGGTCGTTCAGATTCTAGTAGGTATATGCAGCCTCAAAGTGCTGCAGGTGGATTCCCACCGTATGGATCCTCTGCTTATAGTGCTGCTGCTGCTGGATATGGGTATGGTTCAGCTAGCAATGGCCTTGGTTATGGTGCAGCATATGGAAGTTATGGTGGTGCTGCCGCTGGTTATGGTGGACCTGCTGCTGCAACATATGGGAACCCAAATGTCCCTAATGCTGCTTATGCTGCTGGTGGCCCAAGGAGTTCATGGCCTGCTCAGGCTGCCTCTGGCTATGGCTCTATGGGTTATGGTAACACTGCTCCTTGGGGTGCTCCAAGCGGGGGTGCTGGATCTGGTTCAGCAACTGCAGGTCAATCTCCTAGTGCAGCTGCTGGATATGGGAATCAAGGTTATGGGTATGGTGGTTATGGCAGCGGGTATGGTGGAAGTGATAATTCTTATGGGAATCCAGGTGTATATGGTGCTGTTGGCGGGCGTACTGGGAGTGCTCCAAATAGTAATGCTAGTGGTCAGGGTGGTAGTGAACTGCAAGGTAGTGGTGGCAGTGGCAACTATATGGGCAGCGGCTATGGGGATGCAAATGGAAATTCTGGTTACGGAAATGCAGCATGGAGATCTGAACAGGCTCAGGCATCTGGTAATTATGGGACTCCTCAGGGAAATGGTGGGCAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCCCAACAGCAGTAA 1416 0.4753 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVDAKRAFSREDQQISGNSRTGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAEEKFRQYFEAYGLVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGANSRMGGAGGGGAGMGGYPGYGASGGNQNAYDGRSDSSRYMQPQSAAGGFPPYGSSAYSAAAAGYGYGSASNGLGYGAAYGSYGGAAAGYGGPAAATYGNPNVPNAAYAAGGPRSSWPAQAASGYGSMGYGNTAPWGAPSGGAGSGSATAGQSPSAAAGYGNQGYGYGGYGSGYGGSDNSYGNPGVYGAVGGRTGSAPNSNASGQGGSELQGSGGSGNYMGSGYGDANGNSGYGNAAWRSEQAQASGNYGTPQGNGGQVGYGGGYGGAQSRQAQQQ* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1863 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Tpr1g1863 471 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 469 - -
Tpr1g1863 471 MobiDBLite consensus disorder prediction 80 108 - -
Tpr1g1863 471 SMART rrm1_1 7 78 IPR000504 GO:0003723
Tpr1g1863 471 SMART rrm1_1 113 185 IPR000504 GO:0003723
Tpr1g1863 471 MobiDBLite consensus disorder prediction 84 108 - -
Tpr1g1863 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 172 IPR000504 GO:0003723
Tpr1g1863 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Tpr1g1863 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Tpr1g1863 471 MobiDBLite consensus disorder prediction 430 471 - -
Tpr1g1863 471 SUPERFAMILY RNA-binding domain, RBD 111 220 IPR035979 GO:0003676
Tpr1g1863 471 Gene3D - 108 233 IPR012677 -
Tpr1g1863 471 Gene3D - 4 88 IPR012677 -
Tpr1g1863 471 MobiDBLite consensus disorder prediction 393 412 - -
Tpr1g1863 471 SUPERFAMILY RNA-binding domain, RBD 3 110 IPR035979 GO:0003676
Tpr1g1863 471 MobiDBLite consensus disorder prediction 430 450 - -
Tpr1g1863 471 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Tpr1g1863 471 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1863 Tpr-Chr1 18571571 18575166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1863 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 21.939 1.00e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1863 K14411 - gmx:100811267 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1863 1 18571571 18575166 Tpr1g1863 1 18571571 18575166 ECH