Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1857 ATGGTAAAAGCAATAGTATCTTTGCTGTTGATTTCATCTATTTTCTTATGTGTATCTGCAACAGATAATGGATTTCCGAGATGTAATTGTGATGACGAGACCAGTTTATGGACTATTGAGAGTATTTTGGAGTGTCAAAGAGTTGGTGATTTCTTGATTGCTGTGGCCTACTTCTCAATCCCTATTGAACTTCTTTATTTTGTCAGTTGCTCGAACGTCCCTTTCAAATGGGTCCTTGTTCAGTTCATTGCCTTCATAGTTCTATGTGGATTGACACATTTGTTGAATGGTTGGACTTATGGTCCTCACACTTTTCAGCTTATGGTGGCACTTACCGTCTTTAAGATTCTTACTGCCTTGGTGTCTTGTGCTACGGCGATTACTCTTGTCACTTTGATTCCTTTACTTCTTAAAGTGAAGGTTAGGGAATTCATGCTCAAGAAGAAGACGTGGGATCTTGGACGGGAGGTTGGTCTTATTATGAAGCAAAAGGAGGCTGCAATGCATGTAAGAATGCTTACTCAGGAGATTCGTAAGTCACTCGATAGACATACAATTCTGTATACCACTTTGGTGGAGCTTTCTAAAACACTAGGCTTGCAAAATTGTGCTGTGTGGATGCCGAATGAAGAAAAGACAGTGATGAATCTCACTCATGAATTGAACGGAAGGAATTTAAATTTTTCTATACCAATTACTGATTCGGATGTTGTAAAAATCAAGGGAAGCAGTGGAGTGAATGTACTTAGCTCTGACTCGGCCCTTGCTGTTTCCAGTTGTGGAGTTTCTGTTGATGCAGGACCGGTTGCTGCGATCCGAATGCCAATGTTACGTGTTTGTAATTTCAAAGGAGGAACTCCTGAGTTAACTCAGGCGTGTTATGCAATATTGGTCTTGATTCTTCCTGCCGGCGAGCCTAGATCTTGGAGCAATCAGGAGCTGGAGATAATAAAGGTGGTTGCTGATCAGGTTGCCGTGGCTCTATCCCATGCTGCAATTCTTGAAGAGTCTCAACTTATGAGAGAAAAGTTGGAAGAGCGCAATCGAGCTTTGCAACAGGCAAGAAGGAATGCTATGATGGCAAATCAGGCAAGAAACTCGTTTCAGAAAGTCATGAGTGATGGTATGAGGAGGCCTATGCACTCAATTTTAGGATTGCTTTCAATGGTACAAGACGATAACTTAAAGAATGAACAGAAACTTATTGTGGATGCAATGCTAAGGACGAGCAATGTCCTATCGAACTTGATAAATGATGCCATGGACAGCTCGGCAAAGGATGATGGAAGATTTCCTTTGGAGATAAGGTCTTTTGGGTTACATTCCATGATAAAAGAAGCAGCTTGCCTCGCCAAATGCATGTGTGTTTATAAGGGCTTGGGTTTCATGGTCGAGGTTGACAAATCTTTACCGAACAATGTTATGGGTGATGAGAGGAGGGTTTTTCAGGTGATTTTACATATGGTTGGGAATCTCCTGGATTGCAATCATGGGGAAGGAGGGATCCTTGTGTTCCGGGTTTCGGCAGATACCGGTAGTCAAGGGAGGAATGACAAAGGGTGGTCAACCTGGAGACCAAGCTCATCAAGCGGTGATGTAAATATTAGATTTGAGATAGGGATCAACAGTAGCGATGCTGAAGTTGGGAGCTCAGTTTCCTCAGGACTCGGGGGTAGGACATATACCAGTGATAGGTACGAGGGCAGATTGAGCTTTAGTATTTGCAAGAGGATAGTCCAGTTGATGCAAGGAAACTTATGGTTGGTACCATATACTCATGGTATTCCTCAAAGCATGACACTTCTTCTTCGGTTTCAACTACGGCCATCCATTGCAATAGCCATCTCCGAACCCGGAGAATCATCAGAACGCAACTATTCCAATTCAATGTTGAGAGGTCTGCAAGTTCTGTTAGTTGACAACGACTATGTAAATAGAGCAGTAACACAAAAACTGCTTCAGAAACTCGGTTGTTCTGTGACATCTGCTTCTTCGGGATTCGAATGTCTTACTATCATTGGACCTGTTGGATCTTCCGTTCAAGTCATTCTTTTGGATCTCCAAATGCCTGATATAGACGGATTCGAAGTTGCCGCAAGGATTCGGAAGTTTAAAAGTGGAAATAGGCCTATCATTATTGCATTAACCGCAAGCGCGGAAGAAGATTTGTGGGAAAGATGTATGCAGATTGGTGTTAACGGAGTAATCCGAAAACCGGTTTTGTTGCAAGGAATTGCTAGTGAACTCAGAAGAATTCTGATGCAAGGGAATATATAG 2277 0.4238 MVKAIVSLLLISSIFLCVSATDNGFPRCNCDDETSLWTIESILECQRVGDFLIAVAYFSIPIELLYFVSCSNVPFKWVLVQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTVFKILTALVSCATAITLVTLIPLLLKVKVREFMLKKKTWDLGREVGLIMKQKEAAMHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQNCAVWMPNEEKTVMNLTHELNGRNLNFSIPITDSDVVKIKGSSGVNVLSSDSALAVSSCGVSVDAGPVAAIRMPMLRVCNFKGGTPELTQACYAILVLILPAGEPRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEERNRALQQARRNAMMANQARNSFQKVMSDGMRRPMHSILGLLSMVQDDNLKNEQKLIVDAMLRTSNVLSNLINDAMDSSAKDDGRFPLEIRSFGLHSMIKEAACLAKCMCVYKGLGFMVEVDKSLPNNVMGDERRVFQVILHMVGNLLDCNHGEGGILVFRVSADTGSQGRNDKGWSTWRPSSSSGDVNIRFEIGINSSDAEVGSSVSSGLGGRTYTSDRYEGRLSFSICKRIVQLMQGNLWLVPYTHGIPQSMTLLLRFQLRPSIAIAISEPGESSERNYSNSMLRGLQVLLVDNDYVNRAVTQKLLQKLGCSVTSASSGFECLTIIGPVGSSVQVILLDLQMPDIDGFEVAARIRKFKSGNRPIIIALTASAEEDLWERCMQIGVNGVIRKPVLLQGIASELRRILMQGNI* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1857 758 Gene3D - 428 606 IPR036890 -
Tpr1g1857 758 SMART gaf_1 182 338 IPR003018 GO:0005515
Tpr1g1857 758 Gene3D - 634 757 - -
Tpr1g1857 758 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Tpr1g1857 758 ProSiteProfiles Response regulatory domain profile. 635 753 IPR001789 GO:0000160
Tpr1g1857 758 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 418 591 IPR036890 -
Tpr1g1857 758 SMART REC_2 634 753 IPR001789 GO:0000160
Tpr1g1857 758 Pfam GAF domain 182 328 IPR003018 GO:0005515
Tpr1g1857 758 Coils Coil 757 758 - -
Tpr1g1857 758 CDD HATPase_ETR2_ERS2-EIN4-like 470 603 - -
Tpr1g1857 758 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Tpr1g1857 758 Gene3D - 172 327 IPR029016 -
Tpr1g1857 758 Coils Coil 334 364 - -
Tpr1g1857 758 CDD REC_ETR-like 634 749 - -
Tpr1g1857 758 PIRSF Ethylen_sen_hybr_HK 1 758 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Tpr1g1857 758 SUPERFAMILY GAF domain-like 185 331 - -
Tpr1g1857 758 Pfam His Kinase A (phospho-acceptor) domain 365 428 IPR003661 GO:0000155|GO:0007165
Tpr1g1857 758 Pfam Response regulator receiver domain 636 743 IPR001789 GO:0000160
Tpr1g1857 758 ProSiteProfiles Histidine kinase domain profile. 371 586 IPR005467 -
Tpr1g1857 758 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 430 IPR036097 GO:0000155|GO:0007165
Tpr1g1857 758 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 11 757 - -
Tpr1g1857 758 Gene3D - 328 427 - -
Tpr1g1857 758 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 476 592 IPR003594 -
Tpr1g1857 758 PANTHER ETHYLENE RESPONSE SENSOR 2 11 757 - -
Tpr1g1857 758 SUPERFAMILY CheY-like 631 753 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1857 Tpr-Chr1 18472784 18477525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1857 22 753 Miscellaneous Gene Families AT3G04580 58.199 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr1g1857 HATPase_c 2.8e-06 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1857 K14509 - gmx:100787425 1269.6