Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1856 AAATTCATAAATACTATTATAGCAGCAGTTCTGGCTAATCCTTGGTGGACAATTCAAGGAGGGTTATCTGGGGTTGACCCAGGAGCCCATTCACCAACTGGTCTAAACAAACACCACAACACAAACCTAACCATCAACGAAAATCGCGCTGAAGATGAAGAAGAAGAAGAAGATGATGACAACAGAGACGAACCAAGAGAAGGTGCCGTCGAAGTTGGAAACCGAAGACCTAGAGGAAGACCACCTGGATCCAAAAACAGACCAAAACCACCTATCTTTGTAACAAGAGATAGCCCAAATGCTTTAAAGAGCCATGTCATGGAGGTAGCTGGTGGAGCCGATATAGCAGAAAGCGTAGCACAGTTTGCAAGGCGGCGTCAACGAGGCGTTTGTGTTTTAAGTGGAAGTGGAACTGTAGCTAATGTTACTCTTAGACAACCTTCAGCTCCTGGTGCTGTTGTAGCACTTCATGGTAGGTTTGAGATTTTGTCTTTAACTGGGACTTTTCTACCTGGTCCTGCTCCACCAGGTTCAACTGGTCTTACAGTGTACCTGGCTGGAGGACAGGGTCAGGTAGTTGGAGGTTGTGTTGTTGGAACACTTGTTGCTGTTGGACCAGTTATGCTTATTTCTGCTACTTTTACTAATGCAACTTATGAGAGACTTCCACTTGAAGACGATGATAACGATAATGATAATAATAACAACGAAGGGCCTAGTTCTATGGCCGGTGTACAAGGTGGAGGAGCATCTGGTGGATCACCTCCGCCGGGAATTAGTCATCATCAATTGCAGCAAGGTGGAATTCCAGATCCATCTTCTATACCTCCTTTGTATAATTTGCCACCAAATTTGTTGCCTAATAATGGAGGGCAGATGGGACATGAGGCTCTTGCTTGGGCTGCTGCTGCTGCTGCTCATGGAAGGGCACCTTATTGA 939 0.4558 KFINTIIAAVLANPWWTIQGGLSGVDPGAHSPTGLNKHHNTNLTINENRAEDEEEEEDDDNRDEPREGAVEVGNRRPRGRPPGSKNRPKPPIFVTRDSPNALKSHVMEVAGGADIAESVAQFARRRQRGVCVLSGSGTVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVVGGCVVGTLVAVGPVMLISATFTNATYERLPLEDDDNDNDNNNNEGPSSMAGVQGGGASGGSPPPGISHHQLQQGGIPDPSSIPPLYNLPPNLLPNNGGQMGHEALAWAAAAAAHGRAPY* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1856 312 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 19 311 IPR014476 GO:0003680
Tpr1g1856 312 MobiDBLite consensus disorder prediction 244 267 - -
Tpr1g1856 312 Pfam Plants and Prokaryotes Conserved (PCC) domain 104 215 IPR005175 -
Tpr1g1856 312 CDD DUF296 103 186 IPR005175 -
Tpr1g1856 312 PIRSF ESCAROLA 19 312 IPR014476 GO:0003680
Tpr1g1856 312 MobiDBLite consensus disorder prediction 32 98 - -
Tpr1g1856 312 ProSiteProfiles PPC domain profile profile. 99 238 IPR005175 -
Tpr1g1856 312 MobiDBLite consensus disorder prediction 49 64 - -
Tpr1g1856 312 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 19 311 - -
Tpr1g1856 312 Gene3D - 103 230 - -
Tpr1g1856 312 SUPERFAMILY AF0104/ALDC/Ptd012-like 100 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1856 Tpr-Chr1 18432977 18434152 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1856 11 312 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 57.705 2.57e-100 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1856 - - var:108341460 341.658