Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1850 ATGGAGCAAAATATATTTTCTTTTCTTCTTGCATACAGAGAGTTCAAGCCACACCTGCTTATGATCTTTGCCCAAGTAAGCTACACCTTTCTATTTTTCATCACTGAAGCTTCCTTCAACCATGGAATGAGTCCTTATGTTTATGTTACATATCGCCATGTCGTGGCCGGGATTGTGATGTTCCCTTTTGCATACTTTCTAGAGAGAAAAGTAAGGCCAAAGTTGACATTTGCTCTTTTTATGGAAATTTTTTTGCTTTCTGTGTTGGGGATAACTTTGTCTCTCAATTTGTACTTTGCAAGCTTAAAGTATACTTCTCCAACATTTGTTGCTTCCATGTACAACACCGTATCTTCCCTTACCTTCATTATTGCATTGGCACTCAGGTTTGAAGTTGTTGATATTAGAAATCCACGTGGCATAGCAAAGGTATTTGGGACAATAATCTCCTTAGCTGGTGTTATGACCATGACACTATACAAGGGACCTATAATGAAAAATTTGTGGCATCCTCTAATCCATATTCAACCAAAAAGTGCTTCTATCAGTGAGGGAGGGTTAAGGGGTTCACTTCTTACAGTTTCATGCTGTGTTACAATTTCTATGTGGTACATTATGCAGGCATCTACTTTGAAAAGATACCCTGCTGAATTATCACTCACTACATGGATGTGCTTTATTGGAGCAGCACAATCGGCTGTTTTCACAATGATAGTAGAACACAATAACCCTTCAGTATGGATTATAGGGATCAACATCGACTTGTGGTCTACATTATACGGGGGAATTGTTGTTGGTGGATTGTTGATGTACATTCAACTATGGTGCACTGTGAAAAAAGGCCCAGTTTTTGTCACAGTCTTTAACCCTCTTTGTACAATATTTGTGGCAATTCTAGCGTACTTCATCTTTGGTGAAAAACTTTATTTGGGCAGCATCATAGGTGCATTTATTGTCATTATGGGTCTGTATTTGTTGCTGTGGGGTAAAGAAGGTGACAAAGAAGTTGATTTCAAGACCAAGCAGTTCACTAGTGAAGACCCAGAATGCAAAGTGTAG 1059 0.3872 MEQNIFSFLLAYREFKPHLLMIFAQVSYTFLFFITEASFNHGMSPYVYVTYRHVVAGIVMFPFAYFLERKVRPKLTFALFMEIFLLSVLGITLSLNLYFASLKYTSPTFVASMYNTVSSLTFIIALALRFEVVDIRNPRGIAKVFGTIISLAGVMTMTLYKGPIMKNLWHPLIHIQPKSASISEGGLRGSLLTVSCCVTISMWYIMQASTLKRYPAELSLTTWMCFIGAAQSAVFTMIVEHNNPSVWIIGINIDLWSTLYGGIVVGGLLMYIQLWCTVKKGPVFVTVFNPLCTIFVAILAYFIFGEKLYLGSIIGAFIVIMGLYLLLWGKEGDKEVDFKTKQFTSEDPECKV* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1850 352 PANTHER WAT1-RELATED PROTEIN 15 347 - -
Tpr1g1850 352 Pfam EamA-like transporter family 188 327 IPR000620 GO:0016020|GO:0016021
Tpr1g1850 352 Pfam EamA-like transporter family 17 157 IPR000620 GO:0016020|GO:0016021
Tpr1g1850 352 PANTHER WAT1-RELATED PROTEIN 15 347 IPR030184 GO:0016021|GO:0022857
Tpr1g1850 352 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 161 - -
Tpr1g1850 352 SUPERFAMILY Multidrug resistance efflux transporter EmrE 223 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1850 Tpr-Chr1 18361112 18364400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1850 16 351 Nodulin-like Gene Family AT5G07050 40.057 2.97e-90 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1850 - - gmx:100527877 558.91