Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1848 ATGAGTGAAAATGGATCAAAGGGAAGGGTCAAGGACGACGGTGGACATGTCCGGTACCGAGGCGTTCGTTGCCGTCCATGGGGAAAGTTTGCGGCCGAAATTCGTGACTCCAATAAGCAAGGTCAAAGGGTTTGGCTTGGAACTTTCAACACTGCAGAGGAAGCGGCTAGAGCATATGATAGAGCTGCTTACAATATGAGAGGTTCATTTGCAATCCTTAATTTTCCAAATGAATACAATATGCCAGCTCGTGCCGGTTCCGGTGCCACTTCTGCTTCATCATCTTCTTCAAGGAATAACAATGTGGAAGGAAGAGGAAAACAAGTGTTTGAGATTGAGTACTTGGATGATAAGTTGTTGGAAGAGCTTCTTGATTTTGAAGAGAAAAGAAATAAAGGACCCTGA 405 0.4444 MSENGSKGRVKDDGGHVRYRGVRCRPWGKFAAEIRDSNKQGQRVWLGTFNTAEEAARAYDRAAYNMRGSFAILNFPNEYNMPARAGSGATSASSSSSRNNNVEGRGKQVFEIEYLDDKLLEELLDFEEKRNKGP* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1848 134 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Tpr1g1848 134 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 17 128 - -
Tpr1g1848 134 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Tpr1g1848 134 MobiDBLite consensus disorder prediction 85 104 - -
Tpr1g1848 134 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Tpr1g1848 134 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Tpr1g1848 134 PANTHER DNA-BINDING DOMAIN 17 128 IPR044808 GO:0003700|GO:0009873
Tpr1g1848 134 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Tpr1g1848 134 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Tpr1g1848 134 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Tpr1g1848 134 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1848 Tpr-Chr1 18348455 18348862 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1848 13 130 AP2-EREBP Transcription Factor Family AT3G23230 59.524 6.51e-42 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr1g1848 AP2 8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1848 - - aip:107615822 167.162