Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1847 ATGGATCTTGTAAGTAGAAGATTCTTGATCCATTTTTCATCACATGTGACACAATCACAAGCTTTTTCTCCAAGTTCAAGTTCAATTTTTCATCCTCATATGCATCATTCTAGCACAAGTTTTCCAATTATTGCAATTGCTATAATAGGAATATTAGCAACAGCTTTCTTGCTTGTTTCTTACTACATCTTTGTCATCAAATGTTGTCTCAATTGGCACCGTATCGATCTTCTAAGACGATTCTCTCCGTCTAGAAGGCGACAAGATCCAACAACAATATACTCACCGGGGACAGAACCTCGTGGTCTAGACGAAGCAGTGATTCGGTTAATTCCGGTTATTCAATTCAAAACAGAAGAAGGGAATAATAGAGATTTCTGTGAATGTGCTGTTTGTTTGAATGAGTTTCAACAAGATGAAAAACTTAGGATTATACCAAATTGTAGCCATGTTTTTCATATTGATTGCATTGATGTTTGGCTTCAAAACAATGCTAATTGTCCACTTTGTAGAACAAGTATTTCATTGACAAACAGATTCAGCTTTGATCAAATGATTTCACAAACTCCTTTTTCAACTCAAGATCAAAATCCAAATCTCATTGGTGGTGATCAAGATTTTGTTGTTATTGAATTAAGTAACAATAATGGTTTAGATTTACCATTACCATTACCATTACCAAGAGCAAATTCTATTAGGCCTTCACCAAGGAAATTATTGGAGCAAAGAAATGTTGAAAAGAAAGGAATAAAGTTGAAAAAAGTTACAAGTATGGGAGATGAATGTATTGATATTAGAGCAACAAAAGATGAACAATTTTTAGTTCAACCAATTAGAAGATCTTTTTCAATGGATTCATCAACTGATAGACAATTCTATTTAGCAGTTCAAGAAGCTCTGCATCAACAAAAGAGAGAAATCAATGAAGTTAACAACACCATTGAAGGTTGCAGTAGAGCTAAGAAATCATTCTTTTCATTTGGATATGGAAGTAGATCCAGAAGTTCTGTTCAACCTGTTTATTTGGATTCTTGA 1035 0.3362 MDLVSRRFLIHFSSHVTQSQAFSPSSSSIFHPHMHHSSTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRRQDPTTIYSPGTEPRGLDEAVIRLIPVIQFKTEEGNNRDFCECAVCLNEFQQDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTNRFSFDQMISQTPFSTQDQNPNLIGGDQDFVVIELSNNNGLDLPLPLPLPRANSIRPSPRKLLEQRNVEKKGIKLKKVTSMGDECIDIRATKDEQFLVQPIRRSFSMDSSTDRQFYLAVQEALHQQKREINEVNNTIEGCSRAKKSFFSFGYGSRSRSSVQPVYLDS* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1847 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 176 IPR013083 -
Tpr1g1847 344 CDD RING-H2_PA-TM-RING 128 171 - -
Tpr1g1847 344 PANTHER RING-H2 FINGER PROTEIN ATL16 19 343 - -
Tpr1g1847 344 SMART ring_2 129 170 IPR001841 -
Tpr1g1847 344 Pfam Ring finger domain 128 171 IPR001841 -
Tpr1g1847 344 SUPERFAMILY RING/U-box 122 177 - -
Tpr1g1847 344 Coils Coil 293 320 - -
Tpr1g1847 344 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Tpr1g1847 344 PANTHER RING-H2 FINGER PROTEIN ATL16 19 343 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1847 Tpr-Chr1 18340748 18342494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1847 1 343 C3H Transcription Factor Family AT1G04360 48.062 3.69e-98 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1847 - - gmx:100775286 452.21