Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1846 ATGAGTGAAGATGGCGGACATGTCCGGTACCGAGGCGTTCGTTGCCGGCCATGGGGGAAGTTTGCGGCCGAGATTCGCGACTCTAATAGGCAAGGTCAGAGAGTTTGGCTTGGAACTTTCAACACTGCAGAGGAAGCGGCTAGAGCATATGATAGAGCTGCTTACAATATGAGAGGTTCATTTGCAATCCTTAATTTTCCAAATGAATACAATATGCCAACCCGTGCCGGTTCTGGCGCCACTTCTGCTTCATCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAGGAATACAAATGTGGAAGGAAGAGGAAGACAAGTGTTTGAGATTGAGTATTTGGATGATAAGTTGTTGGAAGAGCTTCTTGATTTTGAAGAGAAAAGAAATAAAGGACCCTGA 405 0.4444 MSEDGGHVRYRGVRCRPWGKFAAEIRDSNRQGQRVWLGTFNTAEEAARAYDRAAYNMRGSFAILNFPNEYNMPTRAGSGATSASSSSSSSSSSSSSSRNTNVEGRGRQVFEIEYLDDKLLEELLDFEEKRNKGP* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1846 134 CDD AP2 9 68 IPR001471 GO:0003700|GO:0006355
Tpr1g1846 134 MobiDBLite consensus disorder prediction 75 104 - -
Tpr1g1846 134 Pfam AP2 domain 9 59 IPR001471 GO:0003700|GO:0006355
Tpr1g1846 134 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677
Tpr1g1846 134 ProSiteProfiles AP2/ERF domain profile. 9 67 IPR001471 GO:0003700|GO:0006355
Tpr1g1846 134 SMART rav1_2 9 73 IPR001471 GO:0003700|GO:0006355
Tpr1g1846 134 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 8 128 - -
Tpr1g1846 134 Gene3D AP2/ERF domain 8 68 IPR036955 GO:0003700|GO:0006355
Tpr1g1846 134 PRINTS Ethylene responsive element binding protein signature 10 21 IPR001471 GO:0003700|GO:0006355
Tpr1g1846 134 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700|GO:0006355
Tpr1g1846 134 PANTHER DNA-BINDING DOMAIN 8 128 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1846 Tpr-Chr1 18296989 18297393 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1846 4 130 AP2-EREBP Transcription Factor Family AT3G23230 63.780 6.55e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g1846 AP2 6.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1846 - - gmx:100775830 159.073