Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1845 ATGGAGGATCACCTAAAGGGAAAGCAAGGAAAGGAGGAGAAAGCCGGAAAGGACGAGGTTCGGTTCCGAGGCGTGAGGAGAAGGCCATGGGGGAAGTATGCGGCGGAGATAAGGGATCCGTCGAAGCAAGGGACAAGGATATGGTTAGGGACATTTGATACGGCTGAAGAAGCAGCAAGAGCTTATGATAGAGCAGCTTTTAATTTGAGGGGTCATCTTGCAATTTTGAATTTTCCTAGTGAGTATTATTCTAAAATAAGAGGGTCACCACCATATCCACCTCATTTAGCACCCCCATCATACACCTCTTCATCATCTCATCATGCTAGTGGTAGCTCTTCTGGGCCTCAACATAGGCCCATTTTTGAGTTTGAGTGTTTGGATGATAAGATATTGGAGGAACTTCTTGGATCAGAGGAGGTGAAGAAAAAAAAGTAG 438 0.4543 MEDHLKGKQGKEEKAGKDEVRFRGVRRRPWGKYAAEIRDPSKQGTRIWLGTFDTAEEAARAYDRAAFNLRGHLAILNFPSEYYSKIRGSPPYPPHLAPPSYTSSSSHHASGSSSGPQHRPIFEFECLDDKILEELLGSEEVKKKK* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1845 145 ProSiteProfiles AP2/ERF domain profile. 21 79 IPR001471 GO:0003700|GO:0006355
Tpr1g1845 145 Pfam AP2 domain 21 72 IPR001471 GO:0003700|GO:0006355
Tpr1g1845 145 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Tpr1g1845 145 MobiDBLite consensus disorder prediction 99 117 - -
Tpr1g1845 145 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Tpr1g1845 145 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Tpr1g1845 145 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Tpr1g1845 145 MobiDBLite consensus disorder prediction 1 22 - -
Tpr1g1845 145 SMART rav1_2 21 85 IPR001471 GO:0003700|GO:0006355
Tpr1g1845 145 CDD AP2 21 79 IPR001471 GO:0003700|GO:0006355
Tpr1g1845 145 PANTHER DNA-BINDING DOMAIN 1 140 IPR044808 GO:0003700|GO:0009873
Tpr1g1845 145 MobiDBLite consensus disorder prediction 87 120 - -
Tpr1g1845 145 PANTHER ETHYLENE RESPONSE FACTOR 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1845 Tpr-Chr1 18272802 18273596 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1845 19 143 AP2-EREBP Transcription Factor Family AT3G23230 64.800 7.11e-51 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g1845 AP2 4.6e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1845 - - gmx:100793703 197.208