Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1844 ATGGATTCAAGTCCAACCTCAATTCCACACTCTTCCACTTCAGATTTCTCCTCAGAATCAAGTTCCTTCGAATTCGATTATCTTCCTTTCAACGAAAACGATCCTGAAGAGATGCTTCTCTACGGTATGATCAACGATGCAAACAATAACCTCAACAATCAATATTCTTCCAGTACAAGAGTAAAGGAAGAAGAGGTAAGTTCCGAAGAGAATGAACCGAGGAAGGAGAAGTCATACCGAGGTGTTAGAAGAAGACCATGGGGGAAATTTGCAGCTGAAATAAGGGATTCAACTAGAAATGGAATGAGAGTATGGCTAGGAACATTTGATAGTGCTGAAGAAGCTGCTTTAGCTTATGATCAAGCTGCTTTTTCCATGAGAGGTTCTTCTGCAATACTCAATTTTCCTGTTGAGATTGTTAGAGAATCGCTTAGTGAAATGAAAATGAATTGTGGTGATGGTTCTGAAGATGGGTGTTCACCTGTTGTTGCTTTAAAGAGAAAACATTCTTTGAGAAGGAAAATTGGTTTCAAGAAGAACAAAGAAAAAGATCATGGGAACAATAATAATAGTGTTGTGTTTGAAGATCTTGGTTCTGATTATTTGGAACAATTGTTGATGTCTTCTGAAAATTTTCCTAATCCTCAGTGA 651 0.3763 MDSSPTSIPHSSTSDFSSESSSFEFDYLPFNENDPEEMLLYGMINDANNNLNNQYSSSTRVKEEEVSSEENEPRKEKSYRGVRRRPWGKFAAEIRDSTRNGMRVWLGTFDSAEEAALAYDQAAFSMRGSSAILNFPVEIVRESLSEMKMNCGDGSEDGCSPVVALKRKHSLRRKIGFKKNKEKDHGNNNNSVVFEDLGSDYLEQLLMSSENFPNPQ* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1844 216 CDD AP2 77 137 IPR001471 GO:0003700|GO:0006355
Tpr1g1844 216 Pfam AP2 domain 78 128 IPR001471 GO:0003700|GO:0006355
Tpr1g1844 216 MobiDBLite consensus disorder prediction 62 79 - -
Tpr1g1844 216 ProSiteProfiles AP2/ERF domain profile. 78 136 IPR001471 GO:0003700|GO:0006355
Tpr1g1844 216 SUPERFAMILY DNA-binding domain 78 138 IPR016177 GO:0003677
Tpr1g1844 216 MobiDBLite consensus disorder prediction 51 81 - -
Tpr1g1844 216 MobiDBLite consensus disorder prediction 1 21 - -
Tpr1g1844 216 PANTHER DNA-BINDING DOMAIN 25 208 IPR044808 GO:0003700|GO:0009873
Tpr1g1844 216 SMART rav1_2 78 142 IPR001471 GO:0003700|GO:0006355
Tpr1g1844 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 25 208 - -
Tpr1g1844 216 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Tpr1g1844 216 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Tpr1g1844 216 Gene3D AP2/ERF domain 77 138 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1844 Tpr-Chr1 18252142 18253523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1844 28 211 AP2-EREBP Transcription Factor Family AT3G23240 65.426 8.53e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr1g1844 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1844 K14516 - gmx:100790598 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1844 1 18252142 18253523 Tpr1g1844 1 18252142 18253523 ECH