Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1819 ATGGCAGACGTTGAAGTCGATACAGCAGCAGCCGCCGCCGGAGTCCCAAAGAAGAGAACGTTTAAGAAGTTCAGTTTCAGAGGAGTTGATTTGGATGCTCTTCTTGACATGTCCACTGATGAGCTCGTTAAGCTCTTCAGTGCTCGTGCTCGTAGAAGGTTCCAGAGAGGTCTCACCAGGAAGCCTATGGCTCTCATCAAAAAGCTTCGCAAAGCGAAAAGGGAGGCACCAGCAGGTGAAAAGCCAGAACCTGTTAGGACTCATCTTCGTAACATGATTATTGTTCCTGAGATGATTGGGAGCATTATTGGAGTGTACAATGGAAAGACATTTAACCAGGTTGAAATCAAGCCTGAGATGATTGGACATTACCTTGCTGAGTTCTCAATTTCATACAAGCCAGTTAAGCACGGTAGACCTGGTATTGGTGCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGA 465 0.4645 MADVEVDTAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1819 154 SUPERFAMILY Ribosomal protein S19 57 138 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr1g1819 154 PANTHER BNAA03G55820D PROTEIN 8 154 - -
Tpr1g1819 154 Pfam Ribosomal protein S19 52 137 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g1819 154 Hamap 30S ribosomal protein S19 [rpsS]. 50 143 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g1819 154 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 8 154 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g1819 154 TIGRFAM uS19_arch: ribosomal protein uS19 21 154 IPR005713 GO:0003735|GO:0006412|GO:0015935
Tpr1g1819 154 ProSitePatterns Ribosomal protein S19 signature. 107 131 IPR020934 GO:0003723
Tpr1g1819 154 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 11 154 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g1819 154 Gene3D 30s Ribosomal Protein S19; Chain A 11 154 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr1g1819 154 PRINTS Ribosomal protein S19 family signature 87 106 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g1819 154 PRINTS Ribosomal protein S19 family signature 107 119 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g1819 154 PRINTS Ribosomal protein S19 family signature 119 134 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1819 Tpr-Chr1 17795439 17796949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1819 1 154 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.312 2.09e-95 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1819 K02958 - gmx:100801408 285.804