Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1810 ATGAATTCAAGTGAAGAAGGTGGTGGTGATGATAATCAAGGTAAAAAATGTTCTTATGAATGCACATTTTGCAAAAGAGGCTTCACAAATGCTCAAGCATTAGGTGGTCACATGAATATTCATAGGAAAGATAGATCAAAGGCTTCAAAGCAATCAAATTATTCTTCATCATCACAAGTTTCTAACAAATTCTTCACTAATGATGAAGGTGTGGCTTTTCCTTATGCTAATTCAGAACAACATATGAGTCAAAACTTTGATCATGGCATGTATTTTCAACATCAATATTTTCCAACACCACCACCAAATAATTACCTTGTTGGAAATAATTACCAACCTTCAAATGTGCATGGTTTCGGATATGAATATTCAAGATCATCATCAAATTGGTCTAATTTGCATTTGAATCAAGAGCTTCAAGGTCCTAATTTGAGTCTTCAAATTGGTTCAAGTCAGCATTATGTGGATAACACCCATCATCAAAGAATTAAGAGAGGGAATGATGAGGAAGAAAATGAAGTGGATTTGGAGCTTAGATTAGGCCATGATCCATGA 555 0.3441 MNSSEEGGGDDNQGKKCSYECTFCKRGFTNAQALGGHMNIHRKDRSKASKQSNYSSSSQVSNKFFTNDEGVAFPYANSEQHMSQNFDHGMYFQHQYFPTPPPNNYLVGNNYQPSNVHGFGYEYSRSSSNWSNLHLNQELQGPNLSLQIGSSQHYVDNTHHQRIKRGNDEEENEVDLELRLGHDP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1810 184 SMART c2h2final6 19 41 IPR013087 -
Tpr1g1810 184 Pfam C2H2-type zinc finger 19 43 - -
Tpr1g1810 184 Gene3D Classic Zinc Finger 8 73 - -
Tpr1g1810 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Tpr1g1810 184 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Tpr1g1810 184 SUPERFAMILY beta-beta-alpha zinc fingers 17 45 IPR036236 -
Tpr1g1810 184 PANTHER OS07G0101800 PROTEIN 11 184 - -
Tpr1g1810 184 MobiDBLite consensus disorder prediction 160 184 - -
Tpr1g1810 184 MobiDBLite consensus disorder prediction 42 61 - -
Tpr1g1810 184 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 11 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1810 Tpr-Chr1 17654648 17655708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1810 8 151 C2H2 Transcription Factor Family AT3G09290 31.973 1.77e-15 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g1810 zf-C2H2_6 1.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1810 - - cam:101503281 191.045