Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1804 ATGTTTTATATTGATGATGTTTCAGGAAGTAGTATGAGAGCTAAGAGTTTGATAATTAAGAGGAAGCTTAGTATTAGAAGGAAATTGAAGAAGATGATAAAGTGTGTGTGTTCAAGGGATAAGTTAAGTGTCGATGAAATGAATTATTCATCAGAATCTCTTGCAACTAGGGACTATTCAGCAACAGCAAGTGGTTATTCATCTCATCCTGGTGAAAATGGAACAAAGGTTGATAATAGTAACATTGAAGAAGCAGAGTCATCTCTTCGTGAAAGTGGTTATTTGAACTATGAGGAAGCTAGAGCCTTGTTAGGAAGACTTGAGTATCAGAAAGGCCACATTGAAGCTGCACTTCTAGTATTTGAAGGAATAGACATTGCTTCTGTCATTCCCAAGATGAAAATGTCTATATCTAAAAGATGTGAATCCAATAATAAACACCGTCCGCAAAGTGATTCAGCGCCTTCTATGTCAATACATGCTGTTAGTTTACTTCTTGAAGCTGTTTTCCTCAAAGCTAAATCATTGCAGACTCTCGGAAGGTTTCAAGAAGCTGCTCAATCATGCAAAACTATTTTAGACACTATTGAATCTGCACTACCAGAAGGCTGGCCTGAAAACTTTGTTTCGGATTGTAAATTACAAGAGACGGTAACAAATGCTGTTGAACTGCTTCCAGAATTATGGAAACTTGCAGGCTCACCTCAAGATGTTATCTTATCTTTTAGAAAAGCATTAATTTATCATTGGAATCTTGACAATGAAGCAACTGCAAGAATACAAAAGGAATTTGCGTTGTTTCTTTTGTACAGTGGTTACGAAGCGGACTCTCCTTCACTTCGGTCGCAATTGGACGGTTCGTTTGTGCCAAGAAACAACATAGAAGAAGCTATTCTTCTACTTCTGATTCTGCTGAGAAAATCAAAAGATTCTTCAATAATTCATCACCTTTCTTTTGCTCTAAGTGTTTGTGGTGAATTCGTGACGCTAGCTCAAGAGGTTGAGGAATTACTTCCAGAAACAATGGAGAGAAGAGAAAGATATTATACTCTAGCACTTTGTTACTGCGGCGAAGGTCAGCATATAGTTGCATTGGATCTTTTGAGGAACTTTATGAATAATAGAGAGAACTCAGTATACTCAGATTGCATAGAGGAATTACTTTTAGCTTCGAAAATTTGTGCAGACAATAAGGTTTGTGTCGAAGACGGAATCGAATTTTCAAGCAAGGCTATTTCTCAGATGAATGGAAAATGCAATCAAATTGAAGCTATTGCGAATTGTTTACTAGGTGTTCTACTGTCTGCAAAATCAAAATCAGCTTCTTCTGAATCAGAAAAAGCTTTGATGCAGTCTCAAGCATTCAGTGCTCTAAAAGCTTCTGAGAGAATGATGATGGAAAATGATCCTTATATTGTTCTTAATCTTTGTCTGGAATATGCTGAACATAGGAATTTGAGAATTGCTTATAATCATGCAAAGAAATTGGTTAAGCTGGAAGGTGGGTCTAGTATTAGTGGATATATACTACTAGCACGGATTTTATCGGCTCAAAAAAAGTTTGTTGATGCCGAGATTGTTATTGATGCTGCTTTAGATCAATGCGGAAAATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAGATTCAGATTGCACAGGGAAGATTGAAAAATGCTATTGAGACATACACTTTTTTTCTTGCTGTTCTTCAAGTCCAAAACAAAAGTCTAGGCACTGCAAACAAGATTATGAAGTGTAAGAGAAATCGCGACAGAAGACTTGAAATGGAAGTGTGGCATGATCTAGCCAATGTGTACACAGCTTTATCACATTGGCGCGATGCTGAAGTTTGTCTTGCTAAGTCTCAAGCTATTGATTCATATTCTGCTTCTAGATGGCACTCCACAGGTTTACTTTATGAAGCAAGAGGTCTTCATCAAGAAGCATTGAAATCATTTAGAAAAGCATTAGATATTGAGCCAAACCATGTGGAAAGTTTGATATCAACAGCCTGTGTTCTGAGAAAACTTGGTGGTCAATCATCATCTTCAATTGTTAGAAACCTTCTGACAGAAGCATTAAGGCTTGACAGAACAAACTCATCTGCATGGTACAATCTTGGACTTCTCTACAAAGCTGATTTGGGGTCATCAGCATTGGAAGCTGCTGAGTGCTTTGAAGCAGCTGTTTTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATAA 2232 0.3732 MFYIDDVSGSSMRAKSLIIKRKLSIRRKLKKMIKCVCSRDKLSVDEMNYSSESLATRDYSATASGYSSHPGENGTKVDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGHIEAALLVFEGIDIASVIPKMKMSISKRCESNNKHRPQSDSAPSMSIHAVSLLLEAVFLKAKSLQTLGRFQEAAQSCKTILDTIESALPEGWPENFVSDCKLQETVTNAVELLPELWKLAGSPQDVILSFRKALIYHWNLDNEATARIQKEFALFLLYSGYEADSPSLRSQLDGSFVPRNNIEEAILLLLILLRKSKDSSIIHHLSFALSVCGEFVTLAQEVEELLPETMERRERYYTLALCYCGEGQHIVALDLLRNFMNNRENSVYSDCIEELLLASKICADNKVCVEDGIEFSSKAISQMNGKCNQIEAIANCLLGVLLSAKSKSASSESEKALMQSQAFSALKASERMMMENDPYIVLNLCLEYAEHRNLRIAYNHAKKLVKLEGGSSISGYILLARILSAQKKFVDAEIVIDAALDQCGKWDQGELLRTKAKIQIAQGRLKNAIETYTFFLAVLQVQNKSLGTANKIMKCKRNRDRRLEMEVWHDLANVYTALSHWRDAEVCLAKSQAIDSYSASRWHSTGLLYEARGLHQEALKSFRKALDIEPNHVESLISTACVLRKLGGQSSSSIVRNLLTEALRLDRTNSSAWYNLGLLYKADLGSSALEAAECFEAAVFLEESSPIEPFR* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1804 743 SUPERFAMILY TPR-like 542 713 IPR011990 GO:0005515
Tpr1g1804 743 SUPERFAMILY TPR-like 167 562 IPR011990 GO:0005515
Tpr1g1804 743 ProSiteProfiles TPR repeat profile. 631 664 IPR019734 GO:0005515
Tpr1g1804 743 Gene3D Tetratricopeptide repeat domain 75 569 IPR011990 GO:0005515
Tpr1g1804 743 Gene3D Tetratricopeptide repeat domain 570 739 IPR011990 GO:0005515
Tpr1g1804 743 ProSiteProfiles TPR repeat region circular profile. 631 664 - -
Tpr1g1804 743 Pfam Tetratricopeptide repeat 633 664 IPR019734 GO:0005515
Tpr1g1804 743 PANTHER OS10G0471400 PROTEIN 24 743 - -
Tpr1g1804 743 PANTHER PROTEIN NPG1 24 743 IPR043376 -
Tpr1g1804 743 SMART tpr_5 702 737 IPR019734 GO:0005515
Tpr1g1804 743 SMART tpr_5 631 664 IPR019734 GO:0005515
Tpr1g1804 743 SMART tpr_5 505 538 IPR019734 GO:0005515
Tpr1g1804 743 SMART tpr_5 166 199 IPR019734 GO:0005515
Tpr1g1804 743 SMART tpr_5 597 630 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1804 Tpr-Chr1 17608018 17613242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1804 10 743 Calmodulin-binding Proteins AT4G28600 51.061 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1804 K21843 - gmx:100789469 1105.12