Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1798 ATGGAGAAAATAGGAGTAGTATTATCGGCGAAAGAGGCGTTCGAGAAGCTAGAGAAAGTTGGGGAAGGAACGTATGGGAAGGTTTATAGAGCAAGAGAGAAAGCTACCGGGAAGATCGTTGCTCTTAAGAAGACTCGTCTTCATGAGGATGATGAAGGTGTTCCTCCTACTACTCTTCGCGAGGTTTCCATTCTGAGAATGCTCTCTCGTGATCCACATGTTGTTAGGTTATTGGATGTGAAACAAGGTCAGAACAAGGAAGGAAAAACTGTGCTGTACTTGGTTTTTGAGTACATGGATACTGATCTCAAGAAATTCATTCGTACTTTTCGTCAAACTGGACAAAATATTCCACCTCCAGTCATCAAAGGCTTGATGTACCAACTTTGTAAGGGTGTTGCTTTCTGCCATGGCCATGGAATCTTGCACAGGGATTTGAAGCCTCATAATCTCTTGATGGACCGGAAAACAATGATGCTCAAAATTGCTGATCTTGGACTAGCTAGAGCATTTACTGTGCCTCTTAAGAAGTACACTCATGAGATACTGACCCTGTGGTATAGAGCACCTGAAGTCCTTTTGGGCGCTACACATTACTCAATGGCTGTGGATATTTGGTCTGTTGCGTGCATTTTCGCTGAACTTGTCACCAAGCAAGCACTATTTCCTGGTGATTCTGAGCTGCAACAACTCCTCCACATATTCAGGCTGTTGGGGACTCCTAATGAAGATATGTGGCCAGGTGTTAGTAAACTAATGAACTGGCATGAGTACCCTCAGTGGAGCCCTAACCCTCAAAATCTCTCAAAGGCTGTTCCCACTTTGGAAGATGCTGGACTGGATCTACTCGCTCAAATGCTGCAATATGAACCTGCCAAGCGGATTTCTGCAAAGAAAGCAATGGAACATCCTTACTTTGATGACCTGGACAAGACCAATCTTTAG 945 0.4413 MEKIGVVLSAKEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLLDVKQGQNKEGKTVLYLVFEYMDTDLKKFIRTFRQTGQNIPPPVIKGLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPLKKYTHEILTLWYRAPEVLLGATHYSMAVDIWSVACIFAELVTKQALFPGDSELQQLLHIFRLLGTPNEDMWPGVSKLMNWHEYPQWSPNPQNLSKAVPTLEDAGLDLLAQMLQYEPAKRISAKKAMEHPYFDDLDKTNL* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1798 314 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Tpr1g1798 314 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Tpr1g1798 314 ProSiteProfiles Protein kinase domain profile. 14 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1798 314 PANTHER CELL DIVISION PROTEIN KINASE 8 313 - -
Tpr1g1798 314 Pfam Protein kinase domain 14 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1798 314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Tpr1g1798 314 Gene3D Transferase(Phosphotransferase) domain 1 102 313 - -
Tpr1g1798 314 SUPERFAMILY Protein kinase-like (PK-like) 11 309 IPR011009 -
Tpr1g1798 314 PANTHER - 8 313 - -
Tpr1g1798 314 SMART serkin_6 14 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1798 Tpr-Chr1 17563108 17565492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1798 1 314 Core Cell Cycle Gene Families AT1G20930 82.965 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Tpr1g1798 Pkinase 9.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1798 K07760 - gmx:100808302 580.867