Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1779 ATGGGTATCAAAGATCTTCTCAGATTCATGAAACCTTATGTTGAACCCATTCACATCAAGAACTACGCTGGCAAACGGGTGGGTATTGATGCATATTCATGGCTTCATAAAGGGGCTTATTCATGTAGTATGGAGCTTTGTCTTGATTCTGATAGTGAAAGGAAATTGCGGTATATTGAATACTTTATGCATAGAGTGAATTTGCTTCGGTACTATAAAGTGACACCTGTTGTTGTTTTTGATGGTGGCAATGTTCCTTGCAAAGCAGCAACTGAGAAAGAGAGGAACAAAAAAAGATATACTTATCGTGAGTTGGCGATGAATAAGCTCAAAGAAGGGAATGTTAATGCTGCTTCTGAGCTCTTTCAGAGAGCAGTGAATATTACTCCTGTTATGGCACATAAACTAATTCAGACTTTGAAATCCGAGAACATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGCTAGCATACTTGTCCAACCTTGAAACTGAAAAGGGCGGCATTGCAGCAGTGATCACAGAAGATAGTGATCTGATAGCGTATGGTTGTCCAGCTGTTATCTTTAAGATGGATCGTGAGGGAAATGGCGAAAGAATAGAGTTAGAGAAAGTTTTTTCTGCTGTATCTTGTAAACCTTCATTTCGGAATTTCGATATGAAACTTTTCACAGGTATGTGTGTTTTAGCTGGCTGTGATTTTCTTTCATCTGTTCCTGGCATTGGTGTTGCTCGAGCTCATGCCCTTGTTTCGAAGTATCAGAATATCGATCGTATCTTATCTGTTCTTAAGTTTGAGAAAGGCGATCAAATGCCAGAAGATTACGCCAAATCCTTCAATGATGCACTTGCGGTCTTTCAGCATGCTCGAATATATGATATCAATACCAAAGAACTCAAGCACATGAAGCCTCTTCCGGAAAATTTTCTGGAGTCACTTAACGAAAACCTTGATTTTTTGGGACCAGAAATTCCCTCAACTATAGTCAAATCAATAGCTGAAGGAAACTTGAATCCATCAACTAAGGAAGCCTTTGACGAGTCTGAGTGTTCTAGACTTCCTTTACTCCCTATTGATCCTAAATCCATTGGTCAACTCAGGAAAAGTGAAGTTCCAGGACCATTTAAACAGGAAAATTGTTTTTCAGTCTTTGGCTCTCAGAACTTCAATGAAAATTGTACAGTTACAACGCTTTCAGATAAAGATAAGTATTCAAATGAAGCATCGGCACTTCAGAAACTAATCATGCCATTGAAAACAAACGAAACAATAAAAAAGACCATTACATGTGATAAAACTCCTTTGAAGGTTCCTGACAACAACCCTTTTAGGATAAGAAAACATGTTGAGGAGGAGGAGGAGGAGAAATTAAATTTCTTTCAGAAAGATGAAACAGTTGAAGAAATTTCTAATGTAAGCAGTGTTGAAGAAATTTCTATTGATCTTGATGATTACATGTCACCAAATAACATCCAAGAAAAAGGGTCTAACAATTTGTCAAGGAAAAGGAAATTTGAGAATGTTTGCTTGGATAAAGTAGAAGCTAGTGATGAACAAGTTTCAGGAGTGACTGAAGTGGAAAATTGTGATGCTTTATGCTTGAATATGGAGTCACAAGAAAGTGTAAAGTCTAAGATTAGGAATAATGATTTGAAAGGAAGTGGTGGAAGTGAAAAGAAATCCAAGATAAGTAACTCCAAGAAAAAAGGGAGTAATATTAGAACTATTTTGAATTTCTTTTCAAGAGTGTAA 1758 0.3709 MGIKDLLRFMKPYVEPIHIKNYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSERKLRYIEYFMHRVNLLRYYKVTPVVVFDGGNVPCKAATEKERNKKRYTYRELAMNKLKEGNVNAASELFQRAVNITPVMAHKLIQTLKSENIEFVVAPYEADAQLAYLSNLETEKGGIAAVITEDSDLIAYGCPAVIFKMDREGNGERIELEKVFSAVSCKPSFRNFDMKLFTGMCVLAGCDFLSSVPGIGVARAHALVSKYQNIDRILSVLKFEKGDQMPEDYAKSFNDALAVFQHARIYDINTKELKHMKPLPENFLESLNENLDFLGPEIPSTIVKSIAEGNLNPSTKEAFDESECSRLPLLPIDPKSIGQLRKSEVPGPFKQENCFSVFGSQNFNENCTVTTLSDKDKYSNEASALQKLIMPLKTNETIKKTITCDKTPLKVPDNNPFRIRKHVEEEEEEKLNFFQKDETVEEISNVSSVEEISIDLDDYMSPNNIQEKGSNNLSRKRKFENVCLDKVEASDEQVSGVTEVENCDALCLNMESQESVKSKIRNNDLKGSGGSEKKSKISNSKKKGSNIRTILNFFSRV* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1779 585 Pfam XPG N-terminal domain 1 99 IPR006085 GO:0004518
Tpr1g1779 585 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 580 - -
Tpr1g1779 585 MobiDBLite consensus disorder prediction 546 567 - -
Tpr1g1779 585 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Tpr1g1779 585 SMART xpgineu 141 213 IPR006086 GO:0004518
Tpr1g1779 585 Gene3D - 218 291 - -
Tpr1g1779 585 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 349 IPR036279 -
Tpr1g1779 585 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Tpr1g1779 585 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Tpr1g1779 585 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Tpr1g1779 585 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Tpr1g1779 585 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Tpr1g1779 585 CDD H3TH_FEN1-like 225 295 - -
Tpr1g1779 585 SMART xpgn3 1 102 IPR006085 GO:0004518
Tpr1g1779 585 Gene3D - 1 212 - -
Tpr1g1779 585 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Tpr1g1779 585 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Tpr1g1779 585 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Tpr1g1779 585 MobiDBLite consensus disorder prediction 546 571 - -
Tpr1g1779 585 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Tpr1g1779 585 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 580 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1779 Tpr-Chr1 17280455 17285150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1779 1 318 Core DNA Replication Machinery Family AT5G26680 24.324 1.25e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1779 K10746 - gmx:100817932 801.971