Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1776 ATGGGACAAGGGCAATCGAAAAGCGAATTGCTCTACCAGCAAGTTAGTTATGGGAATTCCGATGGAATCAAAACCCTTCACAGAGAAGGTGCAGGTCTTGAGTATATGGATAAAGAAGGAAAAACACCCCTGATTGTTGCTTGTATGAATCCTGAGCTTTACAATGTTGCTAAAACTTTGATTGAACTCGGAGCAAATGTTAATGCTTATCGTCCCGGTCGTCATGCTGGGACTCCGTTGCATCATGCGGCTAAAAGGGGCCTTGAAAGTATTGTTAAGTTACTTCTTTTGCATGGAGCCAATCCTTTGATCTTGAATGATGATTGTCAAACTGCTCTTGAGGTTGCCAGGGCTAAAGGAAACGCCAATGTTGTTCGTGCAATTGAGAGTCATATATGCTTGTTCTCTGGTTGGTTACGGGAGTTTCATGGACCTGGGTTTCTAGAAGTAGTTGCTCCTAATTTGGTATCCAGAAAAGTTTGGGCGGTAGTTTTACCAGTAGGCTCCCGTGTTCTCACCAGGCCTTACAAGTTGGAGCTTGCCGTATATTATACTTTGCAGGATGCACGACCACGTACACTTGTTGCTCTGTGGAAGGCCAATTTAGAAGAACCAAAGCTTCGCCAATCTGAACCCTCAGTGGCAATTAGTGATAAGACTACGAAAACACGCCTTAAATTTGGGCCCGCAAGTGAGAATGACAGGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCACAGGTAAATCCAGCATTTTTGCAAAATAATGTGCCTACAGTTCCACCAACAGCGCCCCCTGCTGCTGAAGACCCAGAATTGGCTATGGCTATCCATGCTTCTCTTCAGCATGCCATTCAGGAGAGGCCAAGCTTTCCTGATGCCCAACCAAACTCTCAAGCAAGCTCTTCTATCAGTGGAGTGAATGAAGTGCAAGGTTTTCTTGGTACACCAAATACAAATGCTAATGAGTCTGTACATGAAGCTGTTCCAGCTGGCAATGTCTCTGCTGGCCATACTGCCAGTGATCTGAATTTCAATCCATCAGCTCCTCCATTTGCTGATGATGTTCCATCAGATGGCCCGATTCATTATCCTTCAATTGATTTGAGCCCTGTTGATGTATCATCTCAAGTAGTTGAGAAGCTATCTAACGAAGCTGGAAAAACTGCTGATGGAAAACCTGCTGATGGAAGTGGCTCAACGTGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTTAAAACAAAGAAATGGGGTTGCCCTGTTTGTCGAGCTAAGATAGACCAGATCATAAAGCTATATCACGTTTGA 1371 0.4457 MGQGQSKSELLYQQVSYGNSDGIKTLHREGAGLEYMDKEGKTPLIVACMNPELYNVAKTLIELGANVNAYRPGRHAGTPLHHAAKRGLESIVKLLLLHGANPLILNDDCQTALEVARAKGNANVVRAIESHICLFSGWLREFHGPGFLEVVAPNLVSRKVWAVVLPVGSRVLTRPYKLELAVYYTLQDARPRTLVALWKANLEEPKLRQSEPSVAISDKTTKTRLKFGPASENDRQQLTWFSNACKGIPQVNPAFLQNNVPTVPPTAPPAAEDPELAMAIHASLQHAIQERPSFPDAQPNSQASSSISGVNEVQGFLGTPNTNANESVHEAVPAGNVSAGHTASDLNFNPSAPPFADDVPSDGPIHYPSIDLSPVDVSSQVVEKLSNEAGKTADGKPADGSGSTCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQIIKLYHV* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1776 456 SMART ANK_2a 39 69 IPR002110 GO:0005515
Tpr1g1776 456 SMART ANK_2a 75 104 IPR002110 GO:0005515
Tpr1g1776 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 455 IPR013083 -
Tpr1g1776 456 Gene3D - 3 145 IPR036770 -
Tpr1g1776 456 Pfam Zinc finger, C3HC4 type (RING finger) 403 450 - -
Tpr1g1776 456 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Tpr1g1776 456 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Tpr1g1776 456 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Tpr1g1776 456 SUPERFAMILY RING/U-box 404 450 - -
Tpr1g1776 456 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 456 - -
Tpr1g1776 456 PANTHER ROLLING PEBBLES, ISOFORM B 1 456 - -
Tpr1g1776 456 ProSiteProfiles Zinc finger RING-type profile. 405 444 IPR001841 -
Tpr1g1776 456 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Tpr1g1776 456 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Tpr1g1776 456 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Tpr1g1776 456 SMART ring_2 405 443 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1776 Tpr-Chr1 17250539 17256203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1776 377 453 C3H Transcription Factor Family AT3G06140 29.870 3.76e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1776 - - lang:109354249 694.115