Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1773 ATGGTAAGAGCTCCATGTTGTGAAAAAATGGGATTGAAGAGAGGTCCTTGGTCTCTTGAGGAAGATCAAATCCTTACATCTTACATCCAAAAACATGGTCATGGCAACTGGCGTGCTCTCCCAAAGCTAGCAGGCTTGTTAAGGTGTGGAAAAAGCTGCAGACTTAGGTGGATTAACTATTTGAGACCTGATATCAAGAGAGGAAATTTCACAAATGAAGAAGAGGAAAATATCATTAAGCTCCATGAAATGCTTGGGAACAGGTGGTCGGCAATTGCAGCAAAATTACCAGGAAGAACGGACAATGAAATAAAAAATGTGTGGCACACGCATTTGAAGAAGAAACTGTTGAAAACAAATCAAACAAACTCAGAAGCTAAGAAAAAGGTGATCACAAAACAAAAAATCAAACGTTCTGATTCAAATTCAAGCACAATAACACAATCTGAATCAGCTTCTGCATGCACTACTAGTTCTAGTGATTTTTCGTCGGTCACGGTTGGCGAAAAAATAGAGGTAAAAAGTGAAGATATTGAGTCTATGGAAGAGGAAACAATGCCTGAAATTGATGAGAGTTTTTGGACAGAAGCAGCATTGGATGAAACTTCAACTGATATGAAATCAAGTTCTTTGAATATCTCAAATGAGATAATGCCACTTCAATGCCCTTTAAGTAACTCTAATGAAATTTTCCCACAGAATCATGATGATTATAATTCTAACTTAGATGATGGCATGGATTTTTGGTATGATATATTCATTAGGACTGGAGATCAAATAGAATTGCCAGAGTTCTGA 798 0.3709 MVRAPCCEKMGLKRGPWSLEEDQILTSYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEENIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLLKTNQTNSEAKKKVITKQKIKRSDSNSSTITQSESASACTTSSSDFSSVTVGEKIEVKSEDIESMEEETMPEIDESFWTEAALDETSTDMKSSSLNISNEIMPLQCPLSNSNEIFPQNHDDYNSNLDDGMDFWYDIFIRTGDQIELPEF* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1773 265 CDD SANT 69 112 IPR001005 -
Tpr1g1773 265 CDD SANT 16 61 IPR001005 -
Tpr1g1773 265 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr1g1773 265 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tpr1g1773 265 Gene3D - 14 66 - -
Tpr1g1773 265 Gene3D - 69 146 - -
Tpr1g1773 265 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Tpr1g1773 265 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr1g1773 265 MobiDBLite consensus disorder prediction 137 160 - -
Tpr1g1773 265 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 256 - -
Tpr1g1773 265 SMART sant 66 114 IPR001005 -
Tpr1g1773 265 SMART sant 13 63 IPR001005 -
Tpr1g1773 265 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr1g1773 265 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 256 - -
Tpr1g1773 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr1g1773 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr1g1773 265 MobiDBLite consensus disorder prediction 123 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1773 Tpr-Chr1 17225046 17228425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1773 1 265 MYB Transcription Factor Family AT2G31180 51.292 7.36e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g1773 Myb_DNA-binding 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1773 K09422 - gmx:100807569 367.081