Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1769 ATGGAAAAGGGCGGTGAGGCGACGATAGATCTAAAGCGAGACGGCATTGAGGATCTGAGCGGCCGTGTTCATCTACTTCCCTGCTGTATCAAGCACGACGGTCCCACCGAAGTTTCTCACTATTTCAAACCTAAACCCACCGGCGTCGTCGGAGAAGGTTACTCGAAGGTTTTGTTCTGGGAAAGAAAAATTCGTCTAAAAAATCCGGTGAAAGCTCTGATTCTTGGGAGACTAGTGCTACGTTTAATGATATTACGTATTGGAACCATGACTATGTTCCTTCTCAGAATGATGATTTCTTCCGTTCTTTCCATTGGATTACTGTTGCTAAAGCTATATGTGCTTAAGAAGATTAGACTTGCCCGCCAAACTGAGCGGTCTCGCAGATCTGCACACCAGGAGATGGAGCTTATATCTAAATTACGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATTATAGGTTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAGACTAACGGTGTTCTGTTTCCGGAGGAGAAACTTTGCAGATGGCTCGTTCAACTTCTAATGGCACTTGACTACCTGCACATGAATCACATTCTTCATCGTGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGATCGTGACATACGTCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTTGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGCTTGA 822 0.4343 MEKGGEATIDLKRDGIEDLSGRVHLLPCCIKHDGPTEVSHYFKPKPTGVVGEGYSKVLFWERKIRLKNPVKALILGRLVLRLMILRIGTMTMFLLRMMISSVLSIGLLLLKLYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKTNGVLFPEEKLCRWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLA* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1769 273 Gene3D Phosphorylase Kinase; domain 1 107 166 - -
Tpr1g1769 273 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 111 272 - -
Tpr1g1769 273 Pfam Ribonuclease H2 non-catalytic subunit (Ylr154p-like) 23 46 IPR013924 GO:0006401|GO:0032299
Tpr1g1769 273 CDD RNase_H2-C 24 65 IPR013924 GO:0006401|GO:0032299
Tpr1g1769 273 Pfam Protein kinase domain 111 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1769 273 SUPERFAMILY Protein kinase-like (PK-like) 111 272 IPR011009 -
Tpr1g1769 273 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Tpr1g1769 273 SMART serkin_6 93 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1769 273 Gene3D - 3 70 - -
Tpr1g1769 273 PANTHER SERINE/THREONINE-KINASE NEK4 111 272 - -
Tpr1g1769 273 ProSiteProfiles Protein kinase domain profile. 44 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1769 273 Gene3D Transferase(Phosphotransferase) domain 1 167 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1769 Tpr-Chr1 17156909 17160261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1769 111 273 MAP Kinase Kinase Gene Family AT4G29810 33.939 5.45e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Tpr1g1769 Pkinase 5.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1769 K08857 - gmx:100804898 323.553