Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1761 ATGGCTACTATGATTGGGAAAGATAATGATTTGAGCTTGAAGACTGAGCTTTGTCTTGGTTTGCCTGGTGGTGGTGGCGGTGGCGGCTCTGAGCAGGTTGAAACTCCAAGGGCTTCTGCAAAGAGGGGGTTCTCTGAGACTATTGATCTGAAGCTCAATCTTCAAACCAAAGAAGATCTGAATGGGAATATCAAGAATGCTTCAAAGGACAAGAGCCTCCTTAAGGACCCTTCTAAGCCACCAGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCACAAAAGGTTAACAATATTAGTGAAGATGGCAATAATGAGAAGACAACAAGCAGCACTACTTCTGGTGCATTTGTTAAGGTTTCTATGGATGGGGCACCTTACCTTCGTAAGGTTGACTTAACAATGTACAAAACCTACAAAGATTTATCTGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCACTGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGAGACTGGATGCTCGTGGGAGATGTCCCTTGGGAGATGTTTGTTGGATCATGCAAGCGTCTTCGCATAATGAAAGGATCAGAAGCAATTGGGCTTGCACCAAGAGCAATGGAGAAATGCAAAAACCGAAGCTGA 726 0.4449 MATMIGKDNDLSLKTELCLGLPGGGGGGGSEQVETPRASAKRGFSETIDLKLNLQTKEDLNGNIKNASKDKSLLKDPSKPPAKAQVVGWPPVRSYRKNMMAQKVNNISEDGNNEKTTSSTTSGAFVKVSMDGAPYLRKVDLTMYKTYKDLSDALAKMFSSFTTGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKNRS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1761 241 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 11 234 - -
Tpr1g1761 241 ProSiteProfiles PB1 domain profile. 123 223 IPR000270 GO:0005515
Tpr1g1761 241 MobiDBLite consensus disorder prediction 61 86 - -
Tpr1g1761 241 MobiDBLite consensus disorder prediction 63 77 - -
Tpr1g1761 241 Pfam AUX/IAA family 37 232 IPR033389 -
Tpr1g1761 241 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 234 IPR003311 GO:0005634|GO:0006355
Tpr1g1761 241 MobiDBLite consensus disorder prediction 22 42 - -
Tpr1g1761 241 Gene3D - 117 235 - -
Tpr1g1761 241 SUPERFAMILY CAD & PB1 domains 117 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1761 Tpr-Chr1 17076869 17080201 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1761 121 226 B3 DNA Binding Superfamily AT3G61830 33.019 8.91e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tpr1g1761 AUX_IAA 1.1e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1761 K14484 - gmx:547949 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2074 1 21590809 21595828 Tpr1g1761 1 17076869 17080201 ECH
Tpr1g1761 1 17076869 17080201 Tpr1g1761 1 17076869 17080201 ECH