Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1760 ATGGAAAACAGTGTTGCATATGATAAAGATCTTAACATGAAGGATACTGAGCTAAGATTAGGACTTCCAGGAACAGAGAAAAATGAGAAAGAAGAAACAACACTTTCTGTCAAAGTTTCCAACAAAAGACCAATGATTGAATCTTCAAAGGACAATGGTTCAAAAACATCTGATGAAGAAGCACCTCCTTCTAAGGCTAAGATAGTTGGGTGGCCACCAATAAGATCTTATAGGAAGAACAGTTTGCAAGAAGCTGAAGCTTCTGGAATTTATGTGAAAGTGAGTTTAGATGGTGCTCCTTATCTTAGAAAGATTGATTTAAGGATCTATGGAGGCTATGCACAACTTCTCAAAGCTTTAGAAAACATGTTCAAGTTAACCATAGGTGATTACTCTGAAAAAGAAGGTTATAAGGGATCTGATTATGAACCTACTTATGAAGACAAGGATGGTGATTGGATGTTAGTTGGAGATGTTCCATGGGATATGTTTGTGACATCTTGCAAAAGACTAAGAATTATGAAAGGATCAGAAGCTAGAGGTGTTTGA 549 0.3643 MENSVAYDKDLNMKDTELRLGLPGTEKNEKEETTLSVKVSNKRPMIESSKDNGSKTSDEEAPPSKAKIVGWPPIRSYRKNSLQEAEASGIYVKVSLDGAPYLRKIDLRIYGGYAQLLKALENMFKLTIGDYSEKEGYKGSDYEPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGV* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1760 182 Gene3D - 83 182 - -
Tpr1g1760 182 ProSiteProfiles PB1 domain profile. 89 176 IPR000270 GO:0005515
Tpr1g1760 182 PANTHER AUXIN-INDUCED PROTEIN 10 182 - -
Tpr1g1760 182 MobiDBLite consensus disorder prediction 7 37 - -
Tpr1g1760 182 SUPERFAMILY CAD & PB1 domains 80 175 - -
Tpr1g1760 182 Pfam AUX/IAA family 49 181 IPR033389 -
Tpr1g1760 182 MobiDBLite consensus disorder prediction 44 62 - -
Tpr1g1760 182 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 182 IPR003311 GO:0005634|GO:0006355
Tpr1g1760 182 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1760 Tpr-Chr1 17039129 17040684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1760 92 180 B3 DNA Binding Superfamily AT4G23980 32.584 2.99e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tpr1g1760 AUX_IAA 3.2e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1760 K14484 - gmx:100527777 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2073 1 21551968 21553840 Tpr1g1760 1 17039129 17040684 ECH
Tpr1g1760 1 17039129 17040684 Tpr1g1760 1 17039129 17040684 ECH