Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1744 ATGGTAGGATTGGAACTCATACCAATAGGCACAATTTTAACTGTGGTAACAAACCAAGTCTTGAGAACAGCCCATGCTGCAGCTGATGTTCTTATCGGTAAAGAGAGTTTCAAGGCGCTTTCGAAATATCTATTTGATATTGAGCCAGTTCTAAAGGAATTACAGCTTCAAGAATTGAATGATTCTCAACCTGCAAGAATTGCTCTTGAGTCTATTGAAGCAGATGTTAAAAGAGCAAATAATTTGGTTGAGAAGTACAAGAACCGTGGCCGATTTTACTTGCTAGTTAAGTGTCGATCGATAGTTGAAGAAGTTGAACAAGTTACAAGGGATATTGGAAAGTCTCTTGCTGCACTGTCTATTGCAAATACCGAAGTGCTATCGAGAATTTCTGATCAGGTTGATAGACTACAAGATGAGATGCAAAGGGTTGAGTTTGAGGCTTCGCAATCTCAGCTTGAAATTGTTGATAAGTTGAACCAAGGACTAAGAGATCAGAACCATGATCAGGCTTTCGCGAACGATATGCTTGAGTTGATAGCAAGGGCGGTTGGAGTGCCGGTGGAACCGTCCGAGATAGGAAAAGAGTTGGCCAGCATTAGGAAGGAAAAAGAAGAAGCTGCCAATAACAAAGAAAGAGCCGAATTTTATTTCTTGGAGCAGATCATTAAATTACTCTCTAGAGCCGATGCAGCAAGGGATTACGAAGAAGTCAAGAATCAATACTTTGAAAGAGTTCAGGTGATAGAGAGATATGATTCAAGAGAAAAATATATCCTACCGCTTAAATCTTTCCTTTGCTGCATAACCGGAGCTGTTATGGTTGATCCTGTTAGCCTCTCCACAGGTACTACATGTGAGAGATCAGCTATTGAAGGTTGGTTTTACGATGGAAACAGTACAGATCCAGATACAAATGAGGTTCTTGAAGATCTTAGTTTGAGGTCTAATATTCCACTAAGACAATCAATCGAAGAGTGGCGAGAACTTAATTATTGTCTTCTGATAAGGTCTATCAGGGAAAATTTGTTGTTAAATTCTAATCTACAAGAGTCCCTAAGCCAAATGCAGGCTCTAATAGCTGAGAATTCAATTAACAAAGACTGGATCTCTATCGGAGAGCTTACTGATATCGTTATATCGATCCTCGGGAACTCTAATGACAGAGAAGTGAAGATGAAGATTTTGATCACTTTGAAGGATGCTGTAGAAGGGCATGCAAGAAACAAGGAGAAATTGGCCGAATCTCAAGGATGGGATCATATTATTTCATGCTTAGAAAGTGACTCTAACATTTCAAAGGAAGCAGTTGATTTGCTATATGAGTTGCTTCAAGACAGGTCTGGTTGGAATCAATGTTTTTGCAAAAAACTTTCTGAGAACCATAATGCAGTTCTTTTCCTTGTAACCCTTGTAAAGGACCCTGATAACAATTCAGCCGAGGTTGCGCAGAAGATTTTGATGGAGCTTTTTGAAATAAATGAAAACAGTATTATCACCGCTGCTAATTGTGGCTGGTATAAGCCACTAGCTGATCGCATGGTTCAAGGACCGGATTCAAGAATATCAATGGCAAAAGCCATAGTTAATTTGGAGTTGGATGATTTAAACTTGATACAACTTGGCAAGGAAGGAGTTATAGCTCCTTTGATAGAAATGTTGTCTGGAAGTAGACGTGGGATTAGCAATGCATCAACCATTATCGAATCGAAAGACCTGTCATTATCAGCTCTTGTTAAATTAGCTGGATCTCATGCCAACAAGGGAATTATTGCTTCCTCTGGCGGTGTTCCACTTATTTTAGATTTAATGTTCTCTCCTCGAACAAGGTCATTCATTACAATTAAATGCTCTGAAATCCTCGAGAAACTTTCTTCTTCGGATGATGGAATTGATTTCTTTGTTGACGGCGAAGGGAAACAGCTTGAGTTAGATTCAATCATCACCAATTTGCTAGTTTTGCAACAGAGTTCCAACTCAGGTCACAACCTTCGTAAGCCCACGCTACGTGCTCTTCTTGGCATCTGCAAGTTTGAGACTAGTTTGGTGAAAAAAGCAATTCTTACAGCCAATGGTGTATCTCTAATTCTTCCACTTCTTGATGATTCTGACTCAGAAATTCGAGAGACTGCGATAAATCTGCTCTTTCTTTTCTCTCAGCATGAACCAGAAGGAGTAGTCGAATACCTCTTCAAGCCTAGAAGGCTAGAGGCTTTGATAGGATTCCTCGAGAACGACGACAATGATAATGTACAAATGGCTGCTGCTGGTTTACTAGCTAACCTACCGAAATCAGAACGAGAACTAACTAACAAGTTGATTGAAATGGGAGGACTTGATGCAATCTTAAGCATTTTAAAAACTGGTAAAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGATTCACAGATCCAACAAATATCGAGTCACAGCGTGATTTGGTTAAACGCGGAATATATCCTTTACTTGTAGACTTTCTCAATACAGGCTCAGTCACTGCAAAGGCAATAGCAGCAGCTTTCATTGGCGATCTTTCTATGAGCACACCAAAGCTCACAGTTGTTTCCAAACCAAACGGTTGCTGGTTTTTCAGATCATCACGCGTTCCTTTATGCGCAGCGCACGATAGTGTATGCAGTGTGACCACAACATTTTGTCTGTTGGAAGCAAATGCATTACCTGGCTTGATAAAACTGTTACATGGAGAGGTTCATGCAACTGCTTATGAAGCAATACAAACACTTTCTACATTGGTTTTGGAAGAGTTTCCACACAGGGGTGCTCGTTTGTTGCACGAGTCGAATGCAATGAGACCTTTACTGGAGATTTTGAATTGGGGAAGTGAGTCCCTTAAGGCAGAAGCTTTAGGACTTTTGGAGAAGGTTTTTGTGTCAAAGGAAATGGTGGAATACTATGGAATGGCGGCTAGATCGCGTCTAGTTCATTTGACTGGAACAAATATATATGGAGATGGTCATCTTAGAAGGAAAGCTGCTAAGGTTTTATCATTGCTTGAACGTTATTCTAAGTCCTCATCATCTGCAATCTCCGGAGTTTTGGAGTGA 3072 0.402 MVGLELIPIGTILTVVTNQVLRTAHAAADVLIGKESFKALSKYLFDIEPVLKELQLQELNDSQPARIALESIEADVKRANNLVEKYKNRGRFYLLVKCRSIVEEVEQVTRDIGKSLAALSIANTEVLSRISDQVDRLQDEMQRVEFEASQSQLEIVDKLNQGLRDQNHDQAFANDMLELIARAVGVPVEPSEIGKELASIRKEKEEAANNKERAEFYFLEQIIKLLSRADAARDYEEVKNQYFERVQVIERYDSREKYILPLKSFLCCITGAVMVDPVSLSTGTTCERSAIEGWFYDGNSTDPDTNEVLEDLSLRSNIPLRQSIEEWRELNYCLLIRSIRENLLLNSNLQESLSQMQALIAENSINKDWISIGELTDIVISILGNSNDREVKMKILITLKDAVEGHARNKEKLAESQGWDHIISCLESDSNISKEAVDLLYELLQDRSGWNQCFCKKLSENHNAVLFLVTLVKDPDNNSAEVAQKILMELFEINENSIITAANCGWYKPLADRMVQGPDSRISMAKAIVNLELDDLNLIQLGKEGVIAPLIEMLSGSRRGISNASTIIESKDLSLSALVKLAGSHANKGIIASSGGVPLILDLMFSPRTRSFITIKCSEILEKLSSSDDGIDFFVDGEGKQLELDSIITNLLVLQQSSNSGHNLRKPTLRALLGICKFETSLVKKAILTANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFKPRRLEALIGFLENDDNDNVQMAAAGLLANLPKSERELTNKLIEMGGLDAILSILKTGKMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVDFLNTGSVTAKAIAAAFIGDLSMSTPKLTVVSKPNGCWFFRSSRVPLCAAHDSVCSVTTTFCLLEANALPGLIKLLHGEVHATAYEAIQTLSTLVLEEFPHRGARLLHESNAMRPLLEILNWGSESLKAEALGLLEKVFVSKEMVEYYGMAARSRLVHLTGTNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVLE* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1744 1023 Coils Coil 69 89 - -
Tpr1g1744 1023 Gene3D - 870 1021 IPR011989 -
Tpr1g1744 1023 Gene3D - 516 858 IPR011989 -
Tpr1g1744 1023 SUPERFAMILY ARM repeat 644 1011 IPR016024 -
Tpr1g1744 1023 Gene3D - 8 123 IPR036537 GO:0007166
Tpr1g1744 1023 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
Tpr1g1744 1023 Gene3D - 342 511 IPR011989 -
Tpr1g1744 1023 SUPERFAMILY ARM repeat 362 730 IPR016024 -
Tpr1g1744 1023 Coils Coil 127 154 - -
Tpr1g1744 1023 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1020 - -
Tpr1g1744 1023 SUPERFAMILY RING/U-box 249 330 - -
Tpr1g1744 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 333 IPR013083 -
Tpr1g1744 1023 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Tpr1g1744 1023 SMART arm_5 809 849 IPR000225 GO:0005515
Tpr1g1744 1023 SMART arm_5 722 764 IPR000225 GO:0005515
Tpr1g1744 1023 SMART arm_5 680 720 IPR000225 GO:0005515
Tpr1g1744 1023 SMART arm_5 766 806 IPR000225 GO:0005515
Tpr1g1744 1023 SMART arm_5 882 922 IPR000225 GO:0005515
Tpr1g1744 1023 SMART arm_5 926 966 IPR000225 GO:0005515
Tpr1g1744 1023 SMART arm_5 406 445 IPR000225 GO:0005515
Tpr1g1744 1023 SMART arm_5 584 626 IPR000225 GO:0005515
Tpr1g1744 1023 SMART arm_5 534 583 IPR000225 GO:0005515
Tpr1g1744 1023 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Tpr1g1744 1023 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 734 762 IPR000225 GO:0005515
Tpr1g1744 1023 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1020 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1744 Tpr-Chr1 16796955 16802150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1744 263 975 U-box Gene Family AT1G76390 27.190 1.90e-39 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1744 - - gmx:100783638 1607.81