Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1729 ATGGAAGAAAGAGAGAATTTTGGTGCTGTGAATGCAGTAGTTGGTAACGAGGTTCCAGTGAGTTTCCAAGCAGCTCCAAGGATTGAAAACAACTTAGATTTTTCCATGGCAACGGTGCCATCACCGGTGACGGTGCCGGCGTTGAAAAAGAAGAGGGGGAGACCAAGGAAGTATGGACCAGATGGTAAGCCTGCAGCAGGGGCTATAACAGCGCTTTCGCCTATGCCGATTTCATCGTCGATTCCGTTGACTGGAGAGTTCTCTGCTTGGAAAAGGGGTAGAGGGAAGCCTGTTGAATCTATCAAGAAATCATCTTTTAAGTTTGATTTTGAAAGTCCACCTGGACAAGGTGTAGGTGTTAATGAGGGAATTGCATACTCAGTAGGTTCCAACTTCACGGCTTATGTGCTTACAGTGAATTCTGGCGAGGATGTTACTATGAAAATTATGTCCTCCCAACAAGGATCACGTGCTATATGCATTCTCTCTGCAACTGGAACAATTTCAAATGTTACACTTCGTCAATCGACTTCTTCAGGGGGTACTTTAACATACGAGGGACGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACCGATAATGGAATTACAAGAAGCAGATCTGGTGGGATGAGCGTCTCTTTGGCAGGTCCAGATGGTCGAGTATTGGGCGGTGGACTCGCTGGTTTGCTTATAGCTTCTGGTCCTGTGCAGGTTGTTGTAGGAAGTTTTCTTCCTACTAACCATCTAGAGCACAAGAGCAAGAAGCCAAGGGTGGAACATAATATATCAACTATTACACATAATAATCCTCCTCCGCACCTTAATCATCATATGGCAAACGAAGTAAGTTTTGGCGGAGTGAAACCTATTATGACACCTGGTGCATTTCAAGAAGAGAATATCGTTTCTTTCAACAACAATGTTCAAGATTCTAGGAACAACTCATCTGCGGACGACAGAGATCCTTTACCTGAAAAGGACTCTAACAATAGCCAATCAAATGCTTGA 1017 0.4405 MEERENFGAVNAVVGNEVPVSFQAAPRIENNLDFSMATVPSPVTVPALKKKRGRPRKYGPDGKPAAGAITALSPMPISSSIPLTGEFSAWKRGRGKPVESIKKSSFKFDFESPPGQGVGVNEGIAYSVGSNFTAYVLTVNSGEDVTMKIMSSQQGSRAICILSATGTISNVTLRQSTSSGGTLTYEGRFEILSLSGSFMPTDNGITRSRSGGMSVSLAGPDGRVLGGGLAGLLIASGPVQVVVGSFLPTNHLEHKSKKPRVEHNISTITHNNPPPHLNHHMANEVSFGGVKPIMTPGAFQEENIVSFNNNVQDSRNNSSADDRDPLPEKDSNNSQSNA* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1729 338 MobiDBLite consensus disorder prediction 308 338 - -
Tpr1g1729 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 246 IPR005175 -
Tpr1g1729 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 10 328 IPR039605 GO:0003680
Tpr1g1729 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 250 - -
Tpr1g1729 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 10 328 - -
Tpr1g1729 338 CDD DUF296 135 246 IPR005175 -
Tpr1g1729 338 ProSiteProfiles PPC domain profile profile. 129 271 IPR005175 -
Tpr1g1729 338 Gene3D - 133 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1729 Tpr-Chr1 16561571 16566349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1729 37 271 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 59.839 7.04e-83 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1729 - - gmx:100776862 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1729 1 16561571 16566349 Tpr1g1729 1 16561571 16566349 ECH
Tpr2g4493 2 49423403 49428374 Tpr1g1729 1 16561571 16566349 PCT