Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1718 ATGGTCGTTAGCGGAGGCAAATCCCTTAAACGTATGAAAAGAAGAGTCACTGCCGATCACCACGATTTCTTTTCATTCCCTTCACAATCCGTCGCCGTATCAGAAAACTTCTCCGGCGGACCATTCCGTTCCAACATCCGATCTTTTCTCACCAAGTACGCGCTTCTCCCGCCGCCGTCGGCGCTTTTTCCACATTTACTGACGTGGCAGATCCTCTTCCGTGTCGGTGAGATCACCGATGGTTCTGATTCAGGCCCCGCGGTGGTGTGCCTCGATGTTGTGGAAGAGGACGTGGCTAGATCTAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCAGCAACCCAGTGTGCGGGAAACGCTACCATTTTATAATCAAATCTGATGGGAGATCAATTGGTGGATACAACAAACCGTGCATGTGCTGTGGAGATATTTTGCATTTGTCAGAATCCAAGTGTAAGTCATGTAACCATGTGACAACTAGTGATGATGTTGAAGACTGGGTGTACCACCAACTAGAGAACACAAGTCATCTTTTACATGGTGTTATCCATGCCAATGGTTATGGACACCTTCTTCGGGTTAATGGCAGAGAAGGGGGATCTAGATTTCTTTCTGGTTGCCATATTATGGATTTCTGGGATCGCCTATGCAACACACTTGGAGTTAGAAAAGTTAGTGTGATGGATGTTTCAAAGAAATATGGGCTAGAGTATCGCTTGCTCCATGCCATTACGAAGGGACGTCCATGGTACGGTGAGTGGGGATATAATTTTGGCTCCGGTAGCTATTGTCTCACACAGCAAGCATATAAGTCTGCTCTAGAAAGCCTATCCAATCTACCCTTGTCCGTCTTCCTCTCCCAGGAACAAAAGCCCCACTCACGTGTGCAGGATATGATCTTGTATTACCAGGCTTTGTCAGAGCATGAGCTTGTAAATCTGAGGGACCTATTTTGTTTTTTGATGGGTTTGATGCATGATGCTCGCAAGAATGCCTCTAAGTCTGATGACATAACCTGCAAGAAGCGTCGGTTTGATGCTTCTGGATTATCAAGTTCTTGGGAGAAGAGTGACATTGAACGCGTGGAGGAAGCCATGCTCAGAGTGCTGCGTGCAGTGTCTGGGTCTAATTGGGTGAGCCGTCGTGCTCTTAGGGGTGCTGTTTGCAAGGTGGCATCTCCAGAGCTTCTTGATTATTGCCTTGCTGAACTGGGAGGAAAAGTGGTCTATGGTGGGGTTGTTAATAGCAGATGCAACCCTCAAACCGGAGTTTACGAATTCAGAATTGATGCTACAAGTGATTCTTGCTTCGATGGATTTATGGCCAACAACAATTCTTCAGGCCTAAAGTGCCCATCTGAAGAGCATCTCATGCAATGCTTGAGATATTTATACGAGTCTTTACTTCATCCTCGGATGATGCTAAACTATGTTGATGAAGAGACAAGAACTCTTGCAATGAGCTCGGCTCAGAGGCTTCTTGACTGCAAGCAATTAGTAAAAGATTATTGTTCTGAGATTTTGCCAGTGTCAGATTTGTATAAAATGCGCATCTCATGTCAGGTTGAACTAGCTGACCAATCTGAAGATTCTGCAGCTAGAACTCCCCCAGAAATAATTGTGCTGCCCACAAATGCCACGGTATCTGATCTTAAGATTGAAGCAGCAAATGCTTTTCAAGACGTATATCTAATGTTTAGAAGATTTCAAGTTGACGAACTACTTGGCTACAGTGGTGTAGACGATTCCACCCAGGTCAAGGTCTTGTTAGGATCAAATGAAGTGGTTTGTGTCCGAGGAAAATGCTCCGGAAAGACTGGGTTGAGCAAGTTTCGAATGGAACGGGGACTTGAGAGGTGGACTGTGGAGTGCAACTGTGGGGCTAAAGACGACGATGGAGAGAGAATGATGGCTTGTGATATATGTGGGGTGTGGCGGCACACTCGATGTTCTGGCATTCCTGATACTGCTCCTGTTCCAGCTCGTTTTGTTTGCCAGAAATGCCAAAGTTGTGACTCAAAGCCTAAATCTGGTGGGCACTGTAAAGATGAGGAGACTGGGACTAGTGTTAGTAATACTAGTAGTAGTTTCTTTGGAAATGGCTTGCCAGTGCCTTCTGATGTTTCGTTCAGGCATTGA 2151 0.4593 MVVSGGKSLKRMKRRVTADHHDFFSFPSQSVAVSENFSGGPFRSNIRSFLTKYALLPPPSALFPHLLTWQILFRVGEITDGSDSGPAVVCLDVVEEDVARSRSVYCDQCRVFGWSSNPVCGKRYHFIIKSDGRSIGGYNKPCMCCGDILHLSESKCKSCNHVTTSDDVEDWVYHQLENTSHLLHGVIHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCNTLGVRKVSVMDVSKKYGLEYRLLHAITKGRPWYGEWGYNFGSGSYCLTQQAYKSALESLSNLPLSVFLSQEQKPHSRVQDMILYYQALSEHELVNLRDLFCFLMGLMHDARKNASKSDDITCKKRRFDASGLSSSWEKSDIERVEEAMLRVLRAVSGSNWVSRRALRGAVCKVASPELLDYCLAELGGKVVYGGVVNSRCNPQTGVYEFRIDATSDSCFDGFMANNNSSGLKCPSEEHLMQCLRYLYESLLHPRMMLNYVDEETRTLAMSSAQRLLDCKQLVKDYCSEILPVSDLYKMRISCQVELADQSEDSAARTPPEIIVLPTNATVSDLKIEAANAFQDVYLMFRRFQVDELLGYSGVDDSTQVKVLLGSNEVVCVRGKCSGKTGLSKFRMERGLERWTVECNCGAKDDDGERMMACDICGVWRHTRCSGIPDTAPVPARFVCQKCQSCDSKPKSGGHCKDEETGTSVSNTSSSFFGNGLPVPSDVSFRH* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1718 716 PANTHER OS01G0877500 PROTEIN 1 680 - -
Tpr1g1718 716 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 680 - -
Tpr1g1718 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 678 IPR013083 -
Tpr1g1718 716 Pfam PHD-finger 628 675 IPR019787 -
Tpr1g1718 716 SUPERFAMILY FYVE/PHD zinc finger 617 673 IPR011011 -
Tpr1g1718 716 SMART PHD_3 627 673 IPR001965 -
Tpr1g1718 716 CDD PHD_MMD1_like 627 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1718 Tpr-Chr1 16487399 16493922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1718 83 672 PHD Transcription Factor Family AT5G22260 30.794 5.58e-89 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr1g1718 PHD 8.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1718 - - mtr:MTR_1g076990 1298.11