Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1715 ATGGAGAAAAAGCTAGTCGCGAAATACAAAGAGTGTCTTAAGAACCATGCAGCTTCAATTGGTGGCAATGCCACTGATGGATGTGGTGAGTTCATGTCAAGTGGAGAAAATGACACACTTGAAGCTCTCAAATGCTGTGTTTGCAATTGCCACAGAAACTTCCACAGAAAAGAAATAGAATCTGATTCTCAACATTATGCAATTTCACTGATTCCTGATCATAACATTAATGCACCCTTCTTGGCTCATTTATCTCCAAACAACAAAAGTGGGTCAACTAGTCCTTCTGAGCAATCTTATTATGAGAAAGATTGTATTAAGGAGGATGAAAATCGAACCGAAAAGATGATAAAGAAGAGGTCTAGAACTAAGTTCAGTAAAGAACAGAAGGAGAAGATGTTGTGTTTTGCAGAAAAGGCAGAGTGGAAGATACAGAAACTAGAGGAATCTGTGGTGCAGAAGTTTTGTCAAGAGATTGGAATCAAGAGAAGAATACTTAAAGTGTGGATGCATAATAACAAGAACACTTTTGCCAAGAGAAATCTTTCTAGTACTAGCTAG 561 0.3779 MEKKLVAKYKECLKNHAASIGGNATDGCGEFMSSGENDTLEALKCCVCNCHRNFHRKEIESDSQHYAISLIPDHNINAPFLAHLSPNNKSGSTSPSEQSYYEKDCIKEDENRTEKMIKKRSRTKFSKEQKEKMLCFAEKAEWKIQKLEESVVQKFCQEIGIKRRILKVWMHNNKNTFAKRNLSSTS* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1715 186 Gene3D - 104 179 - -
Tpr1g1715 186 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 2 181 - -
Tpr1g1715 186 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 8 59 IPR006456 -
Tpr1g1715 186 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 181 - -
Tpr1g1715 186 Pfam ZF-HD protein dimerisation region 7 59 IPR006456 -
Tpr1g1715 186 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 118 175 IPR006455 -
Tpr1g1715 186 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 9 58 IPR006456 -
Tpr1g1715 186 SUPERFAMILY Homeodomain-like 114 179 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1715 Tpr-Chr1 16461339 16462319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1715 3 181 ZF-HD Transcription Factor Family AT1G14440 50.000 1.15e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tpr1g1715 ZF-HD_dimer 5.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1715 - - gmx:100793926 255.373