Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1713 ATGGCCACCACCAGGCGTTTGAGGGTATTTAAGCGATGGATGAAGTCTAATGGATTCGAATGGAGCGATGCATTGGAGTTTGTAGACACCCCAGAAGAAGGAATAGCTGTTAGAGCTTTGTGTCAAATGAATGAAGGTGAGGTGGTTGCTAAAATGCCAAAGGAAGCTTGTCTTACAATCAATACTAGTGGTGCATGTGAGATCATTGAAAATGCTTGTTTGGGTGGTTATCTGGGTCTAGCTGTTGCTATTATGTATGAGAGAAGCTTAGGTGGAGATTCTCCTTGGGCTGGTTATCTTCAGCTTTTGCCTCAACAGGAATGTTTGCCTTTGGTTTGGACTCTTGATGAAGTTAACCAGCTTTTGTGTGGTACTGAGCTTCATCAGACAGTGCAAGAAGACAAAACTCTTGTATATGAGGACTGGCAAGAGAATATTCTACCCCTGTTGGAATCAGAACCTTCAAAGCTTAACCCGGCATTCTTTGGTGTGGAACAATACTTTGCAGCCAAAAGTCTTATTTCTTCGCGATCTTTCGAGATAGATGATTACCATGGTTTTGGCATGGTTCCCCTGGCAGATCTATTCAATCATAAAACGGGTGCGGAAGATGTGCATTTCACTGCTTTGTCTTCTCATGATGAATCTGATAATGAATCTGACAATGATGATGTTGTTGATGGTTTTGATGAGGGCATTGTTGATGAAGAAGCATTGGCTCAAAATGGCGCTATAGACAAGACTGAGAACGGTGTTGTTAGCGACATGGAGTGTTCATCAGTTACTGAGGATGATACTTCAATGCTGGAGATGGTTATGATAAAAGATGTCAGCAGTGGAGTTGAGGTATTTAATACTTACGGCATATTGGGCAATGCGGCTTTGCTTCATAGATATGGATTTACTGAGCAAGATAACACCTATGATATCGTGAACATTGATTTGGAACTAGTACTTCAATGGTGTTCTTCTTTGTTCTCTGACCGCCACAGCCGATCAAGAATCTCCCTTTGGAGAAGGTTAGGCTATTCCAGTGACAGCGAAAACTCTGAATATTTCGAGATATCATTTGATGGAGAACCACAGATTGAACTACTCATTTTATTATACATCATATTTTTAACAGATGATGTTTACCATAAATTAGACTTATCAGTAGCAATTGCTGGGAACTGTCATGAATCCAGTGAAAAAACCACATTTTTGAATGGTGATGATATCTTTTTCAAAAAGGCATCTGATATGAGCAAGAAAACTTTGCTGACAAAAGAAGTTTGTGATGCTTTGTTGTCACTGTCTGATATAAGGGAGAGTCTCTATGGTTCAAAATCAATTGAAGATGATATTGAGGCATTGGAAAGGTGTAGTTTTGTTAGAGATAGAAAGCTGTATCACTCTTTGGTTCTGCGTATCAGTGAAAGGAAGATCATTCAAAAACTCAGAAATTATGCTTCAAAGTCATGTAAGATTACTAACCCTATTTCTGCCGGGAAGAAGTCGAAAAAGACAACAAAGAGGAAGCGTTAA 1527 0.3962 MATTRRLRVFKRWMKSNGFEWSDALEFVDTPEEGIAVRALCQMNEGEVVAKMPKEACLTINTSGACEIIENACLGGYLGLAVAIMYERSLGGDSPWAGYLQLLPQQECLPLVWTLDEVNQLLCGTELHQTVQEDKTLVYEDWQENILPLLESEPSKLNPAFFGVEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTALSSHDESDNESDNDDVVDGFDEGIVDEEALAQNGAIDKTENGVVSDMECSSVTEDDTSMLEMVMIKDVSSGVEVFNTYGILGNAALLHRYGFTEQDNTYDIVNIDLELVLQWCSSLFSDRHSRSRISLWRRLGYSSDSENSEYFEISFDGEPQIELLILLYIIFLTDDVYHKLDLSVAIAGNCHESSEKTTFLNGDDIFFKKASDMSKKTLLTKEVCDALLSLSDIRESLYGSKSIEDDIEALERCSFVRDRKLYHSLVLRISERKIIQKLRNYASKSCKITNPISAGKKSKKTTKRKR* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1713 508 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 298 500 IPR036464 -
Tpr1g1713 508 SUPERFAMILY SET domain 264 306 IPR046341 -
Tpr1g1713 508 PIRSF RMS1_SET 1 488 IPR011383 GO:0016279|GO:0018026
Tpr1g1713 508 SUPERFAMILY SET domain 5 205 IPR046341 -
Tpr1g1713 508 CDD SET_LSMT 24 302 - -
Tpr1g1713 508 Pfam SET domain 34 288 IPR001214 GO:0005515
Tpr1g1713 508 ProSiteProfiles SET domain profile. 23 288 IPR001214 GO:0005515
Tpr1g1713 508 Gene3D set domain protein methyltransferase, domain 1 3 301 - -
Tpr1g1713 508 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 10 490 - -
Tpr1g1713 508 PANTHER RIBOSOMAL LYSINE N-METHYLTRANSFERASE 3 10 490 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1713 1 506 NAC Transcription Factor Family AT3G56570 53.407 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr1g1713 SET 7.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1713 K05302 - gmx:100794971 717.998