Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1710 ATGGCAACTAGACTTCAGTTTGAAAATTCTTGTGAAATTGGAGCCTTCTCAAAACTTACCAATGCCTATTGTTTGACTGCTATTGGAGGTTCTGAAAACTTCTACAGTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAAACCTCCATTGGCGGCACTCGTCTTGTTGGTTTTCTTTCTGTTGGAAACAAGAACGGACTTTTATTGCCACATACCACCACAGACCAAGAACTTCAACATCTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAGCGTATAGAAGAAAAATTGTCTGCTCTTGGAAATTGTATAGCATGTAACGACCATGTGGCCCTTGCACACACTGATCTCGACAAGGAAACTGAGGAGTTGCTTGCAGATGTTCTTGGAGTTGAAGTTTTCAGGCAGACAGTTGCTGGAAATGTTCTTTCAGGAAGTTACTGTGCTCTGTCCAACAGAGGTGGTTTGGTCCATCCTCATACTTCCATTGAAGACTTGGATGAACTTTCTACACTTCTTCAAGTTCCTTTGGTTGCTGGGACTGTCAATCGTGGTAGTGAAGCAATAGCTGCTGGCATGGTAGTAAATGATTGGACAGCATTCTGTGGCTCAGACACCACAGCAACAGAGCTCTCTGTGATTGACAATGTTTTCATGCTGAGGGGAGACACACGGCCTGGTGATGGTTTCGATGGGATGAGGAAATCTCTCCTTGATAGCTATAAATAA 741 0.4345 MATRLQFENSCEIGAFSKLTNAYCLTAIGGSENFYSAFEAELADVIPVVKTSIGGTRLVGFLSVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEEKLSALGNCIACNDHVALAHTDLDKETEELLADVLGVEVFRQTVAGNVLSGSYCALSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEAIAAGMVVNDWTAFCGSDTTATELSVIDNVFMLRGDTRPGDGFDGMRKSLLDSYK* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1710 246 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 - -
Tpr1g1710 246 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 223 IPR002769 GO:0042256|GO:0043022
Tpr1g1710 246 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Tpr1g1710 246 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 IPR002769 GO:0042256|GO:0043022
Tpr1g1710 246 Hamap Translation initiation factor 6 [eif6]. 1 246 IPR002769 GO:0042256|GO:0043022
Tpr1g1710 246 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Tpr1g1710 246 CDD IF6 2 222 IPR002769 GO:0042256|GO:0043022
Tpr1g1710 246 Gene3D - 1 225 - -
Tpr1g1710 246 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Tpr1g1710 246 SUPERFAMILY Pentein 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1710 Tpr-Chr1 16416088 16423511 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1710 1 245 Eukaryotic Initiation Factors Gene Family AT3G55620 83.265 2.18e-157 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1710 K03264 - pda:103709397 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5029 2 56134317 56137451 Tpr1g1710 1 16416088 16423511 PCT