Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1709 ATGGCTACTAGACTCAAGTTTGAGAATTCTTGTGAAGTTGGAGTCTTCTCAAAACTTACCAATGCTTATTGTTTGGTTGCAATTGGTGGTTCTGAAAATTTCTACAGTGCATTTGAGGCTGAGTTATCAGATGTTATCCCTGTCATTAGAACCTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTATTGGAAACAAGAACGGGCTTCTTTTGCCCCATACCACCACAGACCAAGAACTTCAACATTTGAAAAACAGTTTACCTGATCAAGTTCGTGTTCAGCGCATTGAAGAAAAGTTATCTGCTCTGGGTAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTCGACAAGGAAACTGAGGAGGTAGTTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACAGTTGCCGGTAATATTCTTGTTGGCAGTTACTGCGCTTTCTCCAACAAAGGTGGTCTGGTCCACCCTCACACTTCGGTCGAAGACTTGGATGAATTATCTACACTTCTTCAAGTTCCTTTGGTTGCCGGGACAGTCAACCGTGGTAGCGAAGTAATAGCTGCGGGAATGACAGTCAATGATTGGACAGCGTTTTGTGGTGCAGACACCACAGCTACAGAACTCTCGGTGATTGAAAATGTTTTCAAGCTAAGGGAAGCCAAGCCTAGTGCCATTGTGGATGAGATGAGGAAATCTCTCTTTGATAGCTAA 732 0.4372 MATRLKFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELSDVIPVIRTSIGGTRIVGRLCIGNKNGLLLPHTTTDQELQHLKNSLPDQVRVQRIEEKLSALGNCIACNDHVALTHTDLDKETEEVVADVLGVEVFRQTVAGNILVGSYCAFSNKGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGADTTATELSVIENVFKLREAKPSAIVDEMRKSLFDS* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1709 243 Hamap Translation initiation factor 6 [eif6]. 1 243 IPR002769 GO:0042256|GO:0043022
Tpr1g1709 243 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Tpr1g1709 243 Gene3D - 1 225 - -
Tpr1g1709 243 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 243 - -
Tpr1g1709 243 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 243 IPR002769 GO:0042256|GO:0043022
Tpr1g1709 243 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 224 IPR002769 GO:0042256|GO:0043022
Tpr1g1709 243 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Tpr1g1709 243 SUPERFAMILY Pentein 1 224 - -
Tpr1g1709 243 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Tpr1g1709 243 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1709 Tpr-Chr1 16411113 16414522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1709 1 243 Eukaryotic Initiation Factors Gene Family AT3G55620 87.243 1.20e-166 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1709 K03264 - gmx:100777602 455.292