Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr1g1675 | ATGGAAGCATCCCTTGAACAACACCAACTCTCTTTAGGCTCAAGGGAACACACCAATTATATCATCAAAGGGAAAGGAAGCAAATTGGTTATTAGAGGAACAGGAGCAAGAGCATGTTACTACAATGTGTATGAATGCACAACATGTAACAAAGTTTTCTCTAAATTCCAAGCACTTGGTGGCCATATAACAAGTCACAAGAAGCTTAATGCATTGGAAATTGCTCATGATGATGGTAACAACAACAGATACAAGCTTCATGAGTGCACCATTTGTGGATCTGAATACACAACTGGACAAGCCCTTGGTGGACATATGACGTGCCACCGTGCACCGGTCAGGTCCGCAACCTCCTTAAAACCAATGGCTTTGAAACCTTATAAACCTAGAAAGAAAAGGCATGTCTTGCCTTTAAATTTTGATCTCAACCTTCCAGCTGCACCTGGAGATGAGAAAAGAGAATCCAAGTTTGCCTTTGCAAGAATAAACAAGTCTTGTCTTATCTGCATTGGCCTTGGTGAATTTTCATTACCGTAA | 537 | 0.4097 | MEASLEQHQLSLGSREHTNYIIKGKGSKLVIRGTGARACYYNVYECTTCNKVFSKFQALGGHITSHKKLNALEIAHDDGNNNRYKLHECTICGSEYTTGQALGGHMTCHRAPVRSATSLKPMALKPYKPRKKRHVLPLNFDLNLPAAPGDEKRESKFAFARINKSCLICIGLGEFSLP* | 179 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr1g1675 | 178 | SUPERFAMILY | beta-beta-alpha zinc fingers | 43 | 109 | IPR036236 | - | |
Tpr1g1675 | 178 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 36 | 78 | - | - | |
Tpr1g1675 | 178 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 80 | 154 | - | - | |
Tpr1g1675 | 178 | Pfam | C2H2-type zinc finger | 87 | 112 | - | - | |
Tpr1g1675 | 178 | Pfam | C2H2-type zinc finger | 43 | 68 | - | - | |
Tpr1g1675 | 178 | Gene3D | Classic Zinc Finger | 41 | 109 | - | - | |
Tpr1g1675 | 178 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 89 | 109 | IPR013087 | - | |
Tpr1g1675 | 178 | SMART | c2h2final6 | 87 | 109 | IPR013087 | - | |
Tpr1g1675 | 178 | SMART | c2h2final6 | 44 | 66 | IPR013087 | - | |
Tpr1g1675 | 178 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 46 | 66 | IPR013087 | - | |
Tpr1g1675 | 178 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 80 | 154 | - | - | |
Tpr1g1675 | 178 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 36 | 78 | - | - | |
Tpr1g1675 | 178 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 44 | 71 | IPR013087 | - |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr1g1675 | 25 | 157 | C2H2 Transcription Factor Family | AT2G28200 | 37.017 | 1.93e-26 | 100 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Tpr1g1675 | zf-C2H2_6 | 1.1e-10 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr1g1675 | - | - | gmx:100799383 | 130.954 |