Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1675 ATGGAAGCATCCCTTGAACAACACCAACTCTCTTTAGGCTCAAGGGAACACACCAATTATATCATCAAAGGGAAAGGAAGCAAATTGGTTATTAGAGGAACAGGAGCAAGAGCATGTTACTACAATGTGTATGAATGCACAACATGTAACAAAGTTTTCTCTAAATTCCAAGCACTTGGTGGCCATATAACAAGTCACAAGAAGCTTAATGCATTGGAAATTGCTCATGATGATGGTAACAACAACAGATACAAGCTTCATGAGTGCACCATTTGTGGATCTGAATACACAACTGGACAAGCCCTTGGTGGACATATGACGTGCCACCGTGCACCGGTCAGGTCCGCAACCTCCTTAAAACCAATGGCTTTGAAACCTTATAAACCTAGAAAGAAAAGGCATGTCTTGCCTTTAAATTTTGATCTCAACCTTCCAGCTGCACCTGGAGATGAGAAAAGAGAATCCAAGTTTGCCTTTGCAAGAATAAACAAGTCTTGTCTTATCTGCATTGGCCTTGGTGAATTTTCATTACCGTAA 537 0.4097 MEASLEQHQLSLGSREHTNYIIKGKGSKLVIRGTGARACYYNVYECTTCNKVFSKFQALGGHITSHKKLNALEIAHDDGNNNRYKLHECTICGSEYTTGQALGGHMTCHRAPVRSATSLKPMALKPYKPRKKRHVLPLNFDLNLPAAPGDEKRESKFAFARINKSCLICIGLGEFSLP* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1675 178 SUPERFAMILY beta-beta-alpha zinc fingers 43 109 IPR036236 -
Tpr1g1675 178 PANTHER ZINC FINGER PROTEIN ZAT5 36 78 - -
Tpr1g1675 178 PANTHER ZINC FINGER PROTEIN ZAT5 80 154 - -
Tpr1g1675 178 Pfam C2H2-type zinc finger 87 112 - -
Tpr1g1675 178 Pfam C2H2-type zinc finger 43 68 - -
Tpr1g1675 178 Gene3D Classic Zinc Finger 41 109 - -
Tpr1g1675 178 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Tpr1g1675 178 SMART c2h2final6 87 109 IPR013087 -
Tpr1g1675 178 SMART c2h2final6 44 66 IPR013087 -
Tpr1g1675 178 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Tpr1g1675 178 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 80 154 - -
Tpr1g1675 178 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 36 78 - -
Tpr1g1675 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1675 25 157 C2H2 Transcription Factor Family AT2G28200 37.017 1.93e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g1675 zf-C2H2_6 1.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1675 - - gmx:100799383 130.954