Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1654 ATGATGTCTAGGGCCGAAATGGGTGAAGAAAAGCAACACAGTATTCCCGCTTTGCCATGGATGAGAGACCCTGTCGACATCACTCTCTCTCAACAACTTCCGCTGCATTCTGTTCCTTCTCTCCACCCCAAGTTGAAGTCAGCGCTGGAGGACTTGGGAATCTCAAACCTATTCCCAGTGCAAGTCGCAGTTTGGCACGAAACGGTTGGCCCTGGCAATTTTGAGCGAGACATTTGTGTTAACTCACCCACTGGAAGCGGCAAAACCCTCGCCTACGCTCTCCCCTTAGTGCAGATGCTGTCTGATCGCATCACTAGATGCCTCCGCGCCTTGGTTGTGGTCCCCACTCGCGACCTTGCTTTGCAGGTCAAACAAGTCTTTGATGCCATTGCGTCTCCATTAGGCCTGTGCGTTGGCTTGGCCATTGGTCAATCATCCTTAGCCGACGAGATTTCCGAGCTCGTTGAAATGCCGGCACATGATATAAGCACCTACTATGATCCGCATCACGTTTCACTTCCTCGCTTTCAGAGTAAGGTTGACATATTGGTAGCAACCCCTGGCAGGCTTATGGATCACATTAATACTACCAAAGGCTTCACGCTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGGTTGCTTCGTGAGGCATACCAATCATGGTTGCCTACTGTGGTTGAACTGATCCAATCTAATGATGACGGTTTTTTCCAACCGGCTGATTCTTTTTCCCCCTGTTCTGTTGGTGCATTAAGAACCAGAAGAAGATGTGGAGTTGAGAGGGGATTCAAGGACAAGCCTTATCCCAGGCTGGCAAAAATGGTTCTATCTGCGACATTAACTCAGGATCCAGGCAGGATTATTCAGCTTAATTTGCATCACCCTTTATTATTGAAAGCTGGACAAATGCGTTATCGGCTCCCAGAAAATTTGGAATCTTTTAAACTGATTTGTGATAAAAATGTGAAACCCTTGTACTTAATTGCCCTTTTGAAATCCCTGGGAGAAGAAAAATGCCTAGTTTTTACAAAATCTGTGGATTCAACGCACCGTCTCTGCCAATTGCTGAATTGTTTTGAAGATCTACAAATTGATATCAAGGAGTATTCTAGTCTTCAACATCAACGTGTAAGAAGCAAGACATTGAATGAATTTCGGAAGGGGGTGTTTCAAGTGCTTGTATCTTCTGATGCGTTGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGATGTGCCCAAATACATAAAAACTTATGTTCATCGAGCTGGTAGGACTGCAAGAGCAGGCCAGACTGGGCGTTGCTTCACACTGATGTCAGAAGATGAGGTTCGACGATTTAAGAAGTTGATGCGAAAGGCTGAGGGTGGTTCTTGTCTAGACCATAACATTTCATCCAGTCTAATTGAAGCACTCAATACTTCCTACCAATCAGCACTGACAAAATATAAGGTGATAATTTCAAAGACACAAAAGAAACCCAAGAAGTAG 1512 0.4464 MMSRAEMGEEKQHSIPALPWMRDPVDITLSQQLPLHSVPSLHPKLKSALEDLGISNLFPVQVAVWHETVGPGNFERDICVNSPTGSGKTLAYALPLVQMLSDRITRCLRALVVVPTRDLALQVKQVFDAIASPLGLCVGLAIGQSSLADEISELVEMPAHDISTYYDPHHVSLPRFQSKVDILVATPGRLMDHINTTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVVELIQSNDDGFFQPADSFSPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATLTQDPGRIIQLNLHHPLLLKAGQMRYRLPENLESFKLICDKNVKPLYLIALLKSLGEEKCLVFTKSVDSTHRLCQLLNCFEDLQIDIKEYSSLQHQRVRSKTLNEFRKGVFQVLVSSDALTRGMDVEGVRNVINYDVPKYIKTYVHRAGRTARAGQTGRCFTLMSEDEVRRFKKLMRKAEGGSCLDHNISSSLIEALNTSYQSALTKYKVIISKTQKKPKK* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1654 503 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 483 IPR001650 -
Tpr1g1654 503 PANTHER RNA HELICASE 28 482 - -
Tpr1g1654 503 Gene3D - 24 304 IPR027417 -
Tpr1g1654 503 SMART helicmild6 356 437 IPR001650 -
Tpr1g1654 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 458 IPR027417 -
Tpr1g1654 503 CDD DEADc_DDX51 45 301 - -
Tpr1g1654 503 SMART ultradead3 53 317 IPR014001 -
Tpr1g1654 503 Gene3D - 314 503 IPR027417 -
Tpr1g1654 503 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 69 301 IPR014001 -
Tpr1g1654 503 Pfam DEAD/DEAH box helicase 59 287 IPR011545 GO:0003676|GO:0005524
Tpr1g1654 503 CDD SF2_C_DEAD 314 445 - -
Tpr1g1654 503 Pfam Helicase conserved C-terminal domain 326 437 IPR001650 -
Tpr1g1654 503 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 28 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1654 Tpr-Chr1 15719048 15728674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1654 77 459 Eukaryotic Initiation Factors Gene Family AT1G72730 23.834 1.54e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1654 K14807 - vvi:100258315 672.93