Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1649 ATGGCGCCGCGAAAGAGAAAATTTGATGAAATCAACAAATCAGACAAGAAGTTTTCAGAACGCAAACTCAGTCTCTTCAACAAAGTAACAGAGCTCTCTGTTTTGTGCAATGCAAAAACAGCACTCATCATCATGTCACCTGACAATAAACTCTATACATGTGGCTATCCTAATTGTGACTCCGTTGTTAAACAATTTTTGACCGGAAAAGACATGGTGGAAGACGGTGAGAAAAAGAAGCAAGAAGAGATTGTTGAAACTCTAAGGTTTGAATATGAGGCAATTGAAGAGAAACTTGAAGAAGAAGATAAGAATTTGAAAGCTATGATTGGTGGTGAGAAGAAAGAGAATAGTGATTCTATTTACCCTTGGTGGTGTGATTCTATTGATGATATGAATTTAGAATCTCTTGAAGAATTCAAGGCTTCTTTACAAAATTTGAGGCTCAATTTAGGTTCCGCGATGGACGAAAAGAAATTAACCAATTTAGGCTCAAATTTAATGTAA 507 0.359 MAPRKRKFDEINKSDKKFSERKLSLFNKVTELSVLCNAKTALIIMSPDNKLYTCGYPNCDSVVKQFLTGKDMVEDGEKKKQEEIVETLRFEYEAIEEKLEEEDKNLKAMIGGEKKENSDSIYPWWCDSIDDMNLESLEEFKASLQNLRLNLGSAMDEKKLTNLGSNLM* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1649 168 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 7 161 - -
Tpr1g1649 168 SMART madsneu2 1 57 IPR002100 GO:0003677|GO:0046983
Tpr1g1649 168 SUPERFAMILY SRF-like 10 68 IPR036879 GO:0003677|GO:0046983
Tpr1g1649 168 Coils Coil 78 105 - -
Tpr1g1649 168 Gene3D - 11 94 IPR036879 GO:0003677|GO:0046983
Tpr1g1649 168 ProSiteProfiles MADS-box domain profile. 6 58 IPR002100 GO:0003677|GO:0046983
Tpr1g1649 168 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 53 IPR002100 GO:0003677|GO:0046983
Tpr1g1649 168 PRINTS MADS domain signature 20 35 IPR002100 GO:0003677|GO:0046983
Tpr1g1649 168 PRINTS MADS domain signature 35 56 IPR002100 GO:0003677|GO:0046983
Tpr1g1649 168 Coils Coil 137 157 - -
Tpr1g1649 168 PANTHER MADS BOX PROTEIN 7 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1649 Tpr-Chr1 15637057 15637772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1649 18 148 Type I MADS-box Gene Family AT5G60440 30.657 5.18e-19 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr1g1649 SRF-TF 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1649 - - cam:101507050 165.236