Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1648 ATGGGGCCATTGAGGACTGCTATTAAAGAAGCATGTGAGAAAACAGTCTCAGTTGTAAAGTTCTTATGCGTTTTACATGTTACGAAAAACTACCTGGTTAACCCTGTTATGACTTATGGTCCTAGCATGCTTCCTACAATCGATTTGACACCAAACATCTTTCTTGCTGAAAAGATCTCAACTCGATATGGTAAAGTTGCTCATGGAGATATTGTAGTTCATCGCTCACCTCATAACCCTAGCAAGATCTTCACGAAGCGCTTGATTGGATTAGAGGGTGATAGCATTACATATGTTTCTGATCCCGATAACGGTGATGATAAGCTTGAAACAGTTGTGGTTCCAAAGGGTCACGTTTGGGTACAGGGCGATAACAAATATAATAGCAACGATTCTAGAAATTTTGGTCCAATTCCTTATGGCCTTATTGAGAGCAAGATATTCTGGAGGGTATGGCCACTTAAAGGTTTTGGATCGTTCGAGAAAAAATGA 492 0.4004 MGPLRTAIKEACEKTVSVVKFLCVLHVTKNYLVNPVMTYGPSMLPTIDLTPNIFLAEKISTRYGKVAHGDIVVHRSPHNPSKIFTKRLIGLEGDSITYVSDPDNGDDKLETVVVPKGHVWVQGDNKYNSNDSRNFGPIPYGLIESKIFWRVWPLKGFGSFEKK* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1648 163 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 4 162 - -
Tpr1g1648 163 Pfam Signal peptidase, peptidase S26 108 152 IPR019533 GO:0004252|GO:0006465
Tpr1g1648 163 Pfam Signal peptidase, peptidase S26 15 99 IPR019533 GO:0004252|GO:0006465
Tpr1g1648 163 ProSitePatterns Signal peptidases I signature 3. 119 132 IPR019758 GO:0004252|GO:0016021
Tpr1g1648 163 PRINTS Bacterial leader peptidase 1 (S26A) family signature 31 47 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tpr1g1648 163 PRINTS Bacterial leader peptidase 1 (S26A) family signature 84 96 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tpr1g1648 163 PRINTS Bacterial leader peptidase 1 (S26A) family signature 114 133 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tpr1g1648 163 TIGRFAM sigpep_I_bact: signal peptidase I 19 99 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tpr1g1648 163 CDD S26_SPase_I 35 147 IPR019533 GO:0004252|GO:0006465
Tpr1g1648 163 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 4 162 - -
Tpr1g1648 163 Gene3D Umud Fragment, subunit A 28 160 - -
Tpr1g1648 163 SUPERFAMILY LexA/Signal peptidase 31 160 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1648 Tpr-Chr1 15618219 15625658 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1648 43 158 MADS-box Gene Family AT1G29960 56.897 9.15e-44 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1648 K09647 - zju:107413489 213.772