Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1646 ATGAGGTCATTGATGGGGACCGAGCTTATGAGGATATGTGTTAAAGAAGATAATGATGATTTTCCGTCAGTTCCACCGGGTTTTGAGTCATATACATCTTTCGCACTGAAAAGAGTAGAAGCGAATGAGAAAGACAATGATAAAAATTTGACCAGTTCCTCTACAAGTGCTTCTGAATCGCAGTCAACTCAAGTCGGAAATGGTGTTCAAATTAGTGATACTGCAAAAGTTTCTAGATCCCTTCGACGAAGACCGTGGATTAACCATGGACAGTGTGAGAATGGTTCAGAGGAAGACTGTGATTGTGAGCGGCATGATCAAAATTTCTCCTCGAGACCCTGTCTTCCTAAAGGAGTCATCAGAGGATGTCCAGATTGCCCTAGTTGCCAAAAGGTAATTGCCAAATGGCGACCAGAAGAGGCTCTTAGGCCACATCTCGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGAATTTCAAGATACATTGAAATATATATCGAGTATTCGATCCAGAGCTGAACCATATGGAATTTGTCGTATTGTTCCCCCCCAATCATGGAAGCCCCCTTGTCCTCTGAAGGAAAAAAGTATATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAAAGGATTGACAAACTTCAGAATCGTAATTCAGGGACAAAGAAGTCGAGGATTCAAAATAATTTAAAAAGGAAAAGGAGACGATGCACAAGAATGGGAGTGGATAATGGCACTGAATCAGATCCTAATGCAGTATTTTGTGAAGTTGAAAGGTTTGGGTTTGAACCTGGACCAGAATTTACCTTGGAAACATTTAAGAGATATGCAGATGAGTTTAAGGTCAAATACTTCAGAAATGATAATTTATCTCATCCAAGTGCTAATACAACCATTGTAAGTGGTACCTCGGAGCCTTCTGTGGAGAACATTGAAGGCGAATACTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTAGAAACTGGGGTTTTTGGGAGTGGTTTTCCCATCAACTCTAGTCAAGTTTCTGATTCAAATGAACAGTACATAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGTTACCTGGATCTCTGCTCTCTTATGAAACCAGTGATATATCTGGTGTTGTAGTGCCATGGTTGTATTTAGGAATGTGCTTTTCGTCATTTTGTTGGCATGTGGAAGATCATCATTTATATTCATTGAATTATATGCATTGGGGTGCTCCAAAAATGTGGTATGGTGTCGCTGCAAAAGATGCATGCAAATTGGAAGAGGTCATGAGAAAGCATTTACCTGAACTCTTTGAAGAACAACCTGACTTGCTTCATAAGCTGGTCACACAACTTTCTCCTTCTATTCTTAAGTCTAAAGGTGTGCCAGTTTATAGGTGTGTCCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGTGGCTTCAACTGTGCTGAGGCTGTTAACGTAGCTCCTGTTGACTGGCTGCGCCATGGGCATATTGCTATAGACCTGTACCGGGAGCAGAGGCGCAAGACTTCCATATCTCATGATAAGCTATTGCTTGGGGCTGCTAGGGAAGCAGTACGAGCCCAGTGGGAGATCACTTTGCTTAAGAAAAACACAACGGATAATCTAAAATGGAAAGATGTCTGTGGAAAGGATGGTCTTCTGGCAAGCGCATTCAAGGCACGTGTTGAGACGGAGCGAGTAAAAAGGGAATTTCTCTGCAGTTCTTCAAAAGCATTAAAAATGGAGAGTAGTTTTGATGCTACAAGTGAAAGGGAATGTAGCATCTGTTTTTTTGATTTACACCTATCTGCTGCTGCCTGTCACTGCTCCACAGATAGATATGCTTGCTTGGATCATGCAAAGCAGTTTTGTTCATGCTCTTGGAGCTCTAGATTTTTCCTTTTTCGTTATGATATCAGTGAACTAAATGTTCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCAAAATCGGACCTTGGGCTGGCACTAACTTCTTATATCTCACTAGATAAAAAAACAATAATTCAGGAATTGAAATTGCATCCATCAAATAAATTTATTGACAATGCTCAATCGGCAGATGTTCCAATAGTGGATCGAGCATATTTGGCTAATATTAAGGATCAGAGCTATCTTAAACAGAAGAAGTCAGCAGAAGCTGTGTCTCCTTTGAGTCACAAGAGAGAACTGTCAACATTTAATAGCTCTAAACCTACTCACGAAATGGCTAATCGTAAGATCCGTGTTATTAAAGAAGAATCTGTTAGTTGCATATCAAAGCCGAGTGCCCCTGTTTGTGAATTAAATCAAGAGGATTCTTCATATGCGTTATCTCCACCTTTAGCTCAACATGGAGATGAGAAAAGTTCACATTCCAAACCTAATGTTATACTTCTTAGCGACGATGAAGATGATGAAGTGAAGACATCAGATTCAAATAGAAGGAAGGAGGTTCCTCATATGCTTGCTGGTTCTAGAAATAAAGCAAGCCCGTGTAGTGATATAGAATACAAAAGCCTGACCATTCCTGTAACAGATGCTTCTGTGACGGGCGAGAAGGATGCTATTGCGGTGCATCGTGAAGATTCAGGTTCGAGTTCAACTAAGCTTTTGCATGTAAAACAAGAATGTCACGAACAGAGAGGACCAGTTCTACCTTCAACCCCAGTAGATCTTTCTTTTCATATAGGTCTTACTAGTACAGAACCAGTTAAAAGTATTCCAGCTTCTTCAAGAGTGGATGCCGGTGGTCATAGTTTAGAAACTTTAGAGGTTTTTCCTCCAAACCCACAACCTTCCGGCCCTATTAAGGTTAAGAACGAGGATAATCATGAGAAGTTTGATGGATGTTCCACTTCGAATGTAGCAGACCATGCAAGAGCTGCTATTGGAAATATCTCTTGTGGTCCAAACGTTCACCGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTCCGGCGCATCAACTGCAATGTTGAGCCTTTGGAATTTGGAGTTGTGCTTTCTGGAAAATCATGGTGCAGCAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGCGTTCGATACATAAATATCTTAGATCCATGCAGTACATGTTACTATATTTCAGAAATTCTTGATGCTGGACGTGGTTCGCCTCTATTTATGGTTTCCTTGGAAAATAATCCAAGTGAGGTCTTCATTCACATGTCAGCGACAAAATGCTGGGATATGGTAAGAGAGAGAGTGAATCTAGAGATAGCAAAACAACATAAGTTGGGAAAAAAGGGTCTTCCTCCTTTACATCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCGGCAATAGTGCAGGCTATTGAGGCACTGGACCGAAGTCGAATTTGCAATGAATACTGGGATTCCCGGCCATTCTCTAGGCCTCAAGGTCAGCTTTCACAAGCTGGCCAGAGCACTGTAAATGGTGGAGGCGGAAATGATCAAGGGAATCCTGCGACCGTTGGAGCTGTTTCAGTAATAAAGAGTCTATTTAAAAAGGCGAATGCGCAAGAATTGAACTCATTGTACAGCATTCTTACCGACAACAAGCCAGCAGCTGAACAGATCCCAATTAAGCAAATTCTCTATGAAGAAATTCACAAAACCCAACCACCGTAG 3720 0.4164 MRSLMGTELMRICVKEDNDDFPSVPPGFESYTSFALKRVEANEKDNDKNLTSSSTSASESQSTQVGNGVQISDTAKVSRSLRRRPWINHGQCENGSEEDCDCERHDQNFSSRPCLPKGVIRGCPDCPSCQKVIAKWRPEEALRPHLEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPQSWKPPCPLKEKSIWEGSKFATRVQRIDKLQNRNSGTKKSRIQNNLKRKRRRCTRMGVDNGTESDPNAVFCEVERFGFEPGPEFTLETFKRYADEFKVKYFRNDNLSHPSANTTIVSGTSEPSVENIEGEYWRMVESPTEEIEVLYGADLETGVFGSGFPINSSQVSDSNEQYIKSGWNLNNFARLPGSLLSYETSDISGVVVPWLYLGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVAAKDACKLEEVMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLRHGHIAIDLYREQRRKTSISHDKLLLGAAREAVRAQWEITLLKKNTTDNLKWKDVCGKDGLLASAFKARVETERVKREFLCSSSKALKMESSFDATSERECSICFFDLHLSAAACHCSTDRYACLDHAKQFCSCSWSSRFFLFRYDISELNVLVEALEGKLSAVYRWAKSDLGLALTSYISLDKKTIIQELKLHPSNKFIDNAQSADVPIVDRAYLANIKDQSYLKQKKSAEAVSPLSHKRELSTFNSSKPTHEMANRKIRVIKEESVSCISKPSAPVCELNQEDSSYALSPPLAQHGDEKSSHSKPNVILLSDDEDDEVKTSDSNRRKEVPHMLAGSRNKASPCSDIEYKSLTIPVTDASVTGEKDAIAVHREDSGSSSTKLLHVKQECHEQRGPVLPSTPVDLSFHIGLTSTEPVKSIPASSRVDAGGHSLETLEVFPPNPQPSGPIKVKNEDNHEKFDGCSTSNVADHARAAIGNISCGPNVHRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINILDPCSTCYYISEILDAGRGSPLFMVSLENNPSEVFIHMSATKCWDMVRERVNLEIAKQHKLGKKGLPPLHPPGSLDGFEMFGFSSPAIVQAIEALDRSRICNEYWDSRPFSRPQGQLSQAGQSTVNGGGGNDQGNPATVGAVSVIKSLFKKANAQELNSLYSILTDNKPAAEQIPIKQILYEEIHKTQPP* 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1646 1239 Pfam JmjC domain, hydroxylase 389 505 IPR003347 -
Tpr1g1646 1239 ProSiteProfiles FYR domain FYRN motif profile. 1007 1065 IPR003888 GO:0005634
Tpr1g1646 1239 SMART JmjN_1 148 189 IPR003349 -
Tpr1g1646 1239 Gene3D Cupin 134 506 - -
Tpr1g1646 1239 Gene3D - 1014 1151 - -
Tpr1g1646 1239 MobiDBLite consensus disorder prediction 42 74 - -
Tpr1g1646 1239 MobiDBLite consensus disorder prediction 48 74 - -
Tpr1g1646 1239 MobiDBLite consensus disorder prediction 1161 1181 - -
Tpr1g1646 1239 MobiDBLite consensus disorder prediction 805 851 - -
Tpr1g1646 1239 ProSiteProfiles JmjN domain profile. 149 190 IPR003349 -
Tpr1g1646 1239 MobiDBLite consensus disorder prediction 747 767 - -
Tpr1g1646 1239 ProSiteProfiles JmjC domain profile. 359 522 IPR003347 -
Tpr1g1646 1239 SMART cupin_9 359 522 IPR003347 -
Tpr1g1646 1239 ProSiteProfiles FYR domain FYRC motif profile. 1067 1157 IPR003889 GO:0005634
Tpr1g1646 1239 SUPERFAMILY Clavaminate synthase-like 267 549 - -
Tpr1g1646 1239 SMART fyrc_3 1071 1165 IPR003889 GO:0005634
Tpr1g1646 1239 Pfam F/Y rich C-terminus 1070 1153 IPR003889 GO:0005634
Tpr1g1646 1239 Pfam C5HC2 zinc finger 612 662 IPR004198 -
Tpr1g1646 1239 Pfam F/Y-rich N-terminus 1020 1062 IPR003888 GO:0005634
Tpr1g1646 1239 Pfam jmjN domain 150 183 IPR003349 -
Tpr1g1646 1239 SMART fyrn_3 1021 1065 IPR003888 GO:0005634
Tpr1g1646 1239 MobiDBLite consensus disorder prediction 810 846 - -
Tpr1g1646 1239 PANTHER JUMONJI 14-RELATED 87 700 - -
Tpr1g1646 1239 PANTHER JUMONJI 14-RELATED 995 1236 - -
Tpr1g1646 1239 PANTHER LYSINE-SPECIFIC DEMETHYLASE 995 1236 - -
Tpr1g1646 1239 PANTHER LYSINE-SPECIFIC DEMETHYLASE 87 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1646 Tpr-Chr1 15596523 15606623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1646 5 1234 JUMONJI Transcription Factor Family AT1G08620 54.668 0.0 1231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tpr1g1646 JmjC 2e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1646 - - gmx:100800271 1941.78