Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1621 ATGGCTGAACCACTCCTCTTCGCCCTTGCAGAGTCGTTCATCACTAAACTTGCTTCTCAAGCTGTCAAAGAAGCTTCTCTTGCGCTTGGCGTCTCCAAAGAATTGGAGGATATCAAAAACAATGTTTTATTCATCAAAGCTGTGCTGCTGGATGCTGAGCAAAAGCAGCATCAAAACAACGAGCTTCATGAATGGCTGAAACAGATTAAGCCTATCTTCTCCGATGCCGAAAACGTGATTGATGATTTTGAGTGCGAGCGACTACGAAAACAAGTCGCTTCTGGCAGCATCAGAAAGAAGGTACGGCTTTTCTTTTCATCAAGTTCTAATCCTCTGGTTTACCCCTTTAGAATGGCACATCATATCAAAGATATCAAAGAAAAATTTGACAAGGTTGCAGAAACTAGAGATAAATTTGGCCTTCAAATTATTGACAGTGATAATCGTGTTGTGCAAAGGCGGGAAACTTATTCTCATGTAAATGATTCTGATGTGATAGGAAGAGAACATGATAAACAGAAAATTGTAAAGCTCTTATTGGGTGATGGTGGTGATAAAAGTCTATCTGTTATTGCTATTGTGGGAATTGGGGGTTTGGGAAAGACTACACTTGCAAAAACCGTGTTCAATGATAAGAGTGTAGTTGAGTCTTTTCCATTAAAGATGTGGGTATGTGTCTCCAATGATTTCGAACTTAGGAATCTGCTTCTTAAGATCATCAATTCTGCTCCTAAACAAAATCACCATGAGACGAACATTAAAAACTTTAATATGGAGCAATTGCAAAATCATCTAAGAAATGCACTTGCTGGTCAAAAGTTCTTACTTGTACTGGACGATGTATGGAATGAGGATCGTGTCAAGTGGGAAGAATTGAGGGGTTTCATACAAGCAGGTGCTCAAGGAAGTAAAGTACTAGTGACTACACGTAGCGACAAGGTGGCTAATGTGATGGGCACTTACTCTTCTTGCAATTTGCAAGGGCTTTCTGGAGAGGACTCATTGTCTGTGTTTGTAAAATGGGCTTTTAAAGAAGGAGAAGAGAGAAAATATCCTGAACTAATGGAGATTGCAAAAGAAATTGTGCCTAAATGTGGAGGGGTTCCATTGGCCCTAAGGACATTGGGGAGTTCGTTGTTCTCAGAAGTTGATCAGATACAAAAATGGATCATTGTTAAGGACAATGAGATTTGGAATTTACCACAAAGAGCTGAGGACATTTTACCAGCTATCAAATTAAGTTATGATCAATTACCTTCTTATTTAAAACGATGTTTTGCTTGCTTCTCTCTCTTTGAAGAGGACTTCCATTTCAACAGTTGTCATACAATTATACTTTGGGAGGCTCTTGGTTTTCTTCCATCACCAAGCCAAGGTGAAAAGTTGAAAGATATTGGCAATCAGTATTTACAGGAGCTACGGTCAAGATCTTTTCTTCAAGATTTTGTTGACTATGGCGGTGCTTACAAATTCAAATTGCACGATTTAATGCGTGCTCTTGCACTGTATGTTTCAAGAGATGAGTTTCAATTGTTGAGCCCCCACAATAAAAATATGTCCGAAAATGCCTTACATTTATCATTTGATAATAATAATGATAATTTGTTTGGACAAACTCCACTTCCCCTTCGTTTGAGAACCATACTTTTCCCTACCGGAGTCAACAATGAAGCTTTCTTAAATACTTCGGTGTCCAGGTGCAAATACTTTCGGGCTTTGCAAATAAATAATTCTGGATATAAGAGTTTGCCTCGCTCCATTGGTAGATTAAAACACTTAAGATATCTCAATCTTGAAGATAATGAAGAACTCAAGAGCCTACCTAATTCAGTTTGCGAACTCCAAAATTTAATAAATTTGAATCTCAGTGGATGCACAAAGCTAAAAAAATTGCCATATGGAATTGGAAACTTAATCAGCCTTCAACAACTACATATAACCACAAGGCAGTCTAAATTTCCAAACAAAGAGATTGAAAAATTGACATGTCTAGAAATATTAACTCTTGTTTCTTGTGACAACTTGGAGTCATTGTTTGAATTAGGAATAGAACTTCCTAGTCTTACGTTTTTGGATATTAATTCTTGTAGGAGTCTAAGGTCTGTGTCTCTTCATGTTGTTCCAAACTTAGAGAGTTTGTCTATTGATGGTTGCAACAAGCTGAATTTGTCGATGGGCCATGACAACCAAATTCCCAAGTTAAAGTTAAAGTTATTGTATCTTGAATCTTTGCTACAACTGAAGACTTTTCCTGAGTGGCTACGAGGATGTGCGAAAACATTACAATCCTTGGTAATTGTTGATTGTGACTATCTTGAGGAGCTTCCTGAGTGGCTGTCAACTCTGATTTATCTCAAAACATTTTCAATTGAAAATTGTCCAGCATTGTTTTCGCTCCCGGATGGTGTGCATCACCTCCGAAGCCTTGAATATTTGAAAATGGAAGGTTGTCCTGAATTATGTAGAGGATACCAACCAAATGTTGGAAAGGATTGGCCCAAGATATCACACATCAAACAAGTTATTATTGAAACTCCAGAAAATTAA 2547 0.3781 MAEPLLFALAESFITKLASQAVKEASLALGVSKELEDIKNNVLFIKAVLLDAEQKQHQNNELHEWLKQIKPIFSDAENVIDDFECERLRKQVASGSIRKKVRLFFSSSSNPLVYPFRMAHHIKDIKEKFDKVAETRDKFGLQIIDSDNRVVQRRETYSHVNDSDVIGREHDKQKIVKLLLGDGGDKSLSVIAIVGIGGLGKTTLAKTVFNDKSVVESFPLKMWVCVSNDFELRNLLLKIINSAPKQNHHETNIKNFNMEQLQNHLRNALAGQKFLLVLDDVWNEDRVKWEELRGFIQAGAQGSKVLVTTRSDKVANVMGTYSSCNLQGLSGEDSLSVFVKWAFKEGEERKYPELMEIAKEIVPKCGGVPLALRTLGSSLFSEVDQIQKWIIVKDNEIWNLPQRAEDILPAIKLSYDQLPSYLKRCFACFSLFEEDFHFNSCHTIILWEALGFLPSPSQGEKLKDIGNQYLQELRSRSFLQDFVDYGGAYKFKLHDLMRALALYVSRDEFQLLSPHNKNMSENALHLSFDNNNDNLFGQTPLPLRLRTILFPTGVNNEAFLNTSVSRCKYFRALQINNSGYKSLPRSIGRLKHLRYLNLEDNEELKSLPNSVCELQNLINLNLSGCTKLKKLPYGIGNLISLQQLHITTRQSKFPNKEIEKLTCLEILTLVSCDNLESLFELGIELPSLTFLDINSCRSLRSVSLHVVPNLESLSIDGCNKLNLSMGHDNQIPKLKLKLLYLESLLQLKTFPEWLRGCAKTLQSLVIVDCDYLEELPEWLSTLIYLKTFSIENCPALFSLPDGVHHLRSLEYLKMEGCPELCRGYQPNVGKDWPKISHIKQVIIETPEN* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1621 848 Gene3D - 149 323 IPR027417 -
Tpr1g1621 848 CDD RX-CC_like 12 134 IPR038005 -
Tpr1g1621 848 PRINTS Disease resistance protein signature 190 205 - -
Tpr1g1621 848 PRINTS Disease resistance protein signature 268 282 - -
Tpr1g1621 848 PRINTS Disease resistance protein signature 365 379 - -
Tpr1g1621 848 PRINTS Disease resistance protein signature 683 699 - -
Tpr1g1621 848 Gene3D Ribonuclease Inhibitor 685 828 IPR032675 -
Tpr1g1621 848 Gene3D Ribonuclease Inhibitor 513 684 IPR032675 -
Tpr1g1621 848 SUPERFAMILY L domain-like 492 828 - -
Tpr1g1621 848 Gene3D - 10 123 - -
Tpr1g1621 848 Gene3D - 409 502 IPR036388 -
Tpr1g1621 848 Pfam NB-ARC domain 169 416 IPR002182 GO:0043531
Tpr1g1621 848 PANTHER DISEASE RESISTANCE PROTEIN RP 24 820 IPR044974 GO:0006952
Tpr1g1621 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 428 IPR027417 -
Tpr1g1621 848 Pfam Rx N-terminal domain 11 97 IPR041118 -
Tpr1g1621 848 PANTHER OS08G0543100 PROTEIN 24 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1621 Tpr-Chr1 15264600 15278984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1621 188 841 WRKY Transcription Factor Family AT5G45050 24.493 4.81e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1621 - - mtr:MTR_7g078640 1012.29