Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1612 ATGGCCAACAATGAAGAACAAACATATGCGTTGAAGGATAAATTGAAGGAACTTGTTAATACTATTGTGGAAAATGATGACTTTACTGTGCATGCTGCTGATGAAGCTATCACTGCTCTTTCTATTCTCCGAGATATGAAATGTAGTGTTTCTTTCTCGCGTAAACTGGATCGTTTATCTGTTTCTGTTCCTCCACAGTTTCGATGTCCTATCTCAGGTCATGTTATGACTGATCCTGTTATCTTGGCTAATGGACAGACTTATGATCGACCATTCATCCAAAGGTGGCTGAATGAAATCCACAAAACTTGCCCTCAAACTCAGAATGTCCTCTCTCACTCCATCCTTTCTCCTAACTATTTGGTACATGACATGATTTCAAGGTGGTGTAAGGAGCATGGAATTGAGCTACCAATGCCTATTGGGGAAATCGACAATGGAGAAGTAAGCGAAGCACACAAATACCGTTTAAGTTCATTACTTCACAAACTGTCATTATCTACACTTGACCAAAAAGAAGCTGCAAGCGAGCTTCGGCTGTTATCGAAGCGAATGCCTTCGTTTCGAACACTCTTTGGTGACTCAGAAGTGATTCAGAAATTACTCACTCCATTTTCACCCGGCATGGCTTGTATTGATCCTGAACTCCAAGAGGATTTGATCACAGCTGTTCTAAATCTCTCAATAGAAGAAAAAAATAAGAGAGTTTTCGCAGAGGATGAAAAGCTTATCGCCTTTATTATCGATTCATTGAAATCAGGAACCATTCAAACCAGAAGCAATGCTGCAGCAGCTGTTTTGTCATTATCAGCACTTGATATCAACAAACACATCATTGGAAAAACCGGTGCTATCAAATATTTGGTCGATCTTTTAGAAAATGGACATCCATCAGCAATGAAAGATGCTGCTTCGGCTATATTCAATCTATGTATTGCACATGAAAATAAAGCGAGGACTGTTCGAGAAGGTGCAATTCAGGTTATTCTCAGCAAGATCATCATGGACCATGTTCTAGTCGACGAGCTTTTGGCCTTATTGGCACTTCTATCTAGCCATTCCAAGGCTATTGAGGCATTGGGAAGTCACGGCGCTGTTCCTTTCTTAATGGATATTTTAAGGGATGACAGTGTTTCGGATCGGAGCAAGGAGAACTGTGTTGCAATATTGTACATAATATTTTTCAACGATAAAACAAAGAGGAAGGAAATTAGAGATGATGAAATAGCCAATGGTACATTGTCTAAGCTTGCCCAATGTGGAACTTCAAGAGCTAAGAGGAAAGCTTGCGGTATTCTCGATAGGCTCAAGATAGCTCAATCCTCAACACTTGTGGGTCTCTTTGCTGTCAATTTTAAATAA 1362 0.4001 MANNEEQTYALKDKLKELVNTIVENDDFTVHAADEAITALSILRDMKCSVSFSRKLDRLSVSVPPQFRCPISGHVMTDPVILANGQTYDRPFIQRWLNEIHKTCPQTQNVLSHSILSPNYLVHDMISRWCKEHGIELPMPIGEIDNGEVSEAHKYRLSSLLHKLSLSTLDQKEAASELRLLSKRMPSFRTLFGDSEVIQKLLTPFSPGMACIDPELQEDLITAVLNLSIEEKNKRVFAEDEKLIAFIIDSLKSGTIQTRSNAAAAVLSLSALDINKHIIGKTGAIKYLVDLLENGHPSAMKDAASAIFNLCIAHENKARTVREGAIQVILSKIIMDHVLVDELLALLALLSSHSKAIEALGSHGAVPFLMDILRDDSVSDRSKENCVAILYIIFFNDKTKRKEIRDDEIANGTLSKLAQCGTSRAKRKACGILDRLKIAQSSTLVGLFAVNFK* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1612 453 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Tpr1g1612 453 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Tpr1g1612 453 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 325 IPR000225 GO:0005515
Tpr1g1612 453 SUPERFAMILY ARM repeat 168 436 IPR016024 -
Tpr1g1612 453 SUPERFAMILY RING/U-box 50 137 - -
Tpr1g1612 453 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 443 - -
Tpr1g1612 453 PANTHER U BOX DOMAIN-CONTAINING 5 443 - -
Tpr1g1612 453 SMART arm_5 272 312 IPR000225 GO:0005515
Tpr1g1612 453 SMART arm_5 353 395 IPR000225 GO:0005515
Tpr1g1612 453 CDD RING-Ubox_PUB 67 108 IPR045210 -
Tpr1g1612 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 136 IPR013083 -
Tpr1g1612 453 Gene3D - 159 443 IPR011989 -
Tpr1g1612 453 Pfam U-box domain 63 133 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1612 Tpr-Chr1 15114184 15116448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1612 125 443 U-box Gene Family AT3G07360 50.153 4.81e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1612 - - gmx:100806132 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1612 1 15114184 15116448 Tpr1g1612 1 15114184 15116448 ECH