Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1610 ATGGATTTAACGTCCACTTCATCTGGAATTGGTGATATTCATTCGACTGAAGCATCTGGAAGTGAACCATTGACTTCATCTGATAGTTCTCAATGTTGCCACCCTAACATTAAGAAATCATGGGACACTTTAGTATTTCATTCTATTAAAGAGGTTGAAGATTTCTATGGTCAGTATGCATATAAAACTGGATTTTCAATCAGGAGTATGTTGAAGTCGAAGAATAATTCAAAGAATAAGAAGTCGGATAAGATACATTACATACGTTATGTTTGTGACAAAGAAGGTTTTAAGAAAGGAAGTTTGCTTAATCCGAACAACAAGCCAAGATCAGACAGTCCGGTTGTTATTGAATTTGAAAAAGTGAAAGAGAGACCGGAGGAAAGGATTGGTTGTAAAGCTGGAATATATCTGATGTTGGATGAAGCATTGAATGTTTATAAGATATATAGATGGGAAGGGAATCACTGTCATCCACTACATAGAGAACAGCATCACCGTTACCTCAGATCATTCCGAGAAGTAAATGAAGTTCAAGGACAACTTGCTTTAATTAATTCTAAAGCTGGAATGTCAATGAGGACGTCATGGGTCAAGGAGTTGGAGGCACGGAGAATCTCCCATTTCGGTTTTCGGACTTAA 642 0.3723 MDLTSTSSGIGDIHSTEASGSEPLTSSDSSQCCHPNIKKSWDTLVFHSIKEVEDFYGQYAYKTGFSIRSMLKSKNNSKNKKSDKIHYIRYVCDKEGFKKGSLLNPNNKPRSDSPVVIEFEKVKERPEERIGCKAGIYLMLDEALNVYKIYRWEGNHCHPLHREQHHRYLRSFREVNEVQGQLALINSKAGMSMRTSWVKELEARRISHFGFRT* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1610 213 Pfam FAR1 DNA-binding domain 54 161 IPR004330 -
Tpr1g1610 213 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 37 169 - -
Tpr1g1610 213 MobiDBLite consensus disorder prediction 1 31 - -
Tpr1g1610 213 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 37 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1610 Tpr-Chr1 15093866 15094507 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr1g1610 FAR1 2.3e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1610 - - mtr:MTR_0558s0020 287.73