Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1598 ATGGAAGCAGCAGTGGCACAGATGGTAACGCCGGGAGAAGTATTAGGCAAAACCGACGACGTTAAAGCCGGAAGAGGAACATACGCGGCGGTTCACAACAACACCGTTTACGCCTCCTTAACTGGTTTCCGCCACACCATACCTCCTGCTTCGGACTCACCTGACCAGAGACCTACTATTGAAGTAACTGGTCATAAAGCTCATGGACCTGTTCCTGAACCTGGATCTGTTGTCATTGCTAGGGTTACTAAAGTTATGGCTAAAACTGCCTCACTAGATATTATGTGTGTTGGACAAAAATCTGTTCGCGAAAAATTCACCGGCATGATTAGGCAGCAAGATGTTAGGGCAACTGAGATTGATAAAGTAGATATGCATCTATCTTTTCGTCCTGGTGACATTGTTAAAGCTCTTGTGCTTTCTCTTGGAAATGCACGGGCGTACTTTCTGTCAACTGCAAAGAATGAGCTTGGTGTTGTTTCTGCAGAAAGCACTGCTGGTGCAACTTTGGTTCCAATAAGTTGGACGGAGATGCAATGTCCACTATCTGGTCAAATTGAACAAAGAAAGGTTGCAAAGGTTGCAAGCCTTTCAATGGCTTCTCTTCATCTTCTTCCTTCTCTCTCCAAATCCTTGTCTTCAATATCCCCTCTTTCCCAATATCACACTCATCCATTCGCTTCCACAACCTCACTCAGATTCGCCCATACCATCACTTATACCAATACCCGTTTTCCTACCAAACCTCTTTCTCTGCGTTTTGCTCTAACAGAGTCTAACACCCCTAATTCTACACAACCTGACCCCAAAACTCTTCTCCAAGAAATTGCCGACAGTTTTGATCTTCCTGTTGATTACTTTGCGCAGTTTCCAAGTGATCTTCGATTAGATCTGAATGACGCTGCGTTCGACCTTTCAAATGGACCTATCTTGGACGAGTGTGGCAAAGAGTTAGGAGAGATATTGCTAAACCTCTCTCGAGCATGGGAGCTTGCTGATACTTCCACCTCCCGCTCTTTAGCAGCAAAGCTTCCATTGATAGAGGCTAATTTGACAGGCACTGCCAAGTCAGCACTTGGAAGGCGTTTGGTATCTGCTGGAAGAAGGTTTCAGTCAATGGGACAATATGGCCAAGGTGAGACACAAAAGATTGCAAAAGCAATGATTGCGGCCGGGAAAGCTCTATCTGCTAGTTCAACTTCTGCAATAATAGATAAAGAACCGAAAGAAGAAAATAGGACTCTGAAGTTTGGAGCATTGCAGGTTGAAATTACACCTACTAAAGCCAACATTGGCGCTGCAATTGCATTTGTGTTTGGGATTCTTACATGGGAGATAGCTCAAGGACTTCAAAACACTCCAGAGAGTTCTTTGCAGTATGCAAATGACAATGCTTTGTTGCTTGCTAAGTCTTTGAGGGGAACATTGCTTGCTCTTTTTTACGGCTCCACGTTGTTGTCCGCACTTACTTCAGGGGGGCTTGTTTTACTTGGTATACAGCACTCATCTGATATGGCTTCTTCCTCTTGCTCCGCCACAGACCTCACCCCACTTCTCACCGCCGCCGCAAACGCAACTGCTGTGGCAAACTATCTCTGCACCCAATTTGATGCCATCTCCAAAAAGTTCAGTGATACCACCTATGCAATAGACAACACCTACCTTCTCTTCTCAGCTTACTTAGTCTTCGCTATGCAGCTCGGTTTCGCCATGCTCTGCGCCGGCTCTGTTCGAGCCAAAAACACCATGAACATCATGCTCACCAATGTCCTTGATGCAGCTGCCGGTGGACTTTCCTATTACCTCTTCGGCTTTGCTTTCGCCTTTGGAGCACCCTCCAACGGCTTCATTGGACGCCACTTTTTTGGCCTAAGGGATTACCCTTCACCCGCCGGAGACTACAGCTTCTTTCTCTATCAATGGGCTTTCGCCATCGCCGCTGCAGGCATCACCAGTGGCTCTATTGCAGAGAGAACACAGTTTGTCGCATATCTCATATATTCTTCTTTCTTAACCGGTTTTGTTTATCCCATCGTTTCACATTGGGTTTGGTCCGCTGATGGATGGGCCAGCCCAACGCGAACCGATGGTGATGTCTTATTCGGGTCCGGAGTAATTGACTTTGCCGGTTCAGGCGTGGTTCACATGGTTGGCGGTATAGCAGGTTTATGGGGAGCATTTATAGAAGGTCCAAGAATCGGCCGCTTCGACCGGACCGGTCGGGTTGTTGCATTAAAAGGACACAGTGCATCGTTGGTAGTGTTGGGTTCATTTTTATTATGGTTCGGTTGGTACGGGTTCAACCCTGGTTCATTTTTAACAATTGTAAAAGGTTATGGCAATAACAAAGGAGATTATTATGGTCAATGGAGTGCTATCGGAAGGACAGCTGTCACAACGACATTGGCGGGATGCACCGCAGCTTTAACAACATTGTTTAGTAAACGGTTATTGGTTGGACACTGGAATGTGACTGACGTGTGTAACGGTTTACTTGGCGGTTTTGCTGCGATAACTTCGGGCTGTTCTGTTGTTGAACCATGGGCTGCGATTGTGTGTGGGTTCATTGCAGCATGGGTTTTGATTGGACTTAATAAACTAGCCGTTAAGGTGAAGTATGATGATCCTTTAGAGGCGGCGCAATTACACGGAGGGTGTGGCGCGTGGGGGGTGTTGTTTACAGGATTGTTTGCGAAAGCGGAATATGTTGATGAGATTTATGGGATTGGGAGGCCGTATGGATTGTTGATGGGTGGCGGAGGAAAGTTGTTTGCGGCGCAAGTTATTGAGGTGTTGGTGGTATGTGTGTGGGTTACAGTGACGATGGCACCATTGTTTTATGGGCTGAATAAGATGAAATTGTTGAGGATTTCAAGGGATGATGAAACCGCGGGAATGGATTTGACGAGACATGGTGGATTTGCTTATGCATATCATGATGAAGATGATGATGAATCGATCAGGAAATTAGGGTTTATGATGGGTAGAATTGAGCCGGCTGGGAGTGTAACTCCCTCCGCCACCGGACATGATTCACAGATGCCAACCACTACACCACCAGTGTGA 3066 0.4641 MEAAVAQMVTPGEVLGKTDDVKAGRGTYAAVHNNTVYASLTGFRHTIPPASDSPDQRPTIEVTGHKAHGPVPEPGSVVIARVTKVMAKTASLDIMCVGQKSVREKFTGMIRQQDVRATEIDKVDMHLSFRPGDIVKALVLSLGNARAYFLSTAKNELGVVSAESTAGATLVPISWTEMQCPLSGQIEQRKVAKVASLSMASLHLLPSLSKSLSSISPLSQYHTHPFASTTSLRFAHTITYTNTRFPTKPLSLRFALTESNTPNSTQPDPKTLLQEIADSFDLPVDYFAQFPSDLRLDLNDAAFDLSNGPILDECGKELGEILLNLSRAWELADTSTSRSLAAKLPLIEANLTGTAKSALGRRLVSAGRRFQSMGQYGQGETQKIAKAMIAAGKALSASSTSAIIDKEPKEENRTLKFGALQVEITPTKANIGAAIAFVFGILTWEIAQGLQNTPESSLQYANDNALLLAKSLRGTLLALFYGSTLLSALTSGGLVLLGIQHSSDMASSSCSATDLTPLLTAAANATAVANYLCTQFDAISKKFSDTTYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNGFIGRHFFGLRDYPSPAGDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWVWSADGWASPTRTDGDVLFGSGVIDFAGSGVVHMVGGIAGLWGAFIEGPRIGRFDRTGRVVALKGHSASLVVLGSFLLWFGWYGFNPGSFLTIVKGYGNNKGDYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAIVCGFIAAWVLIGLNKLAVKVKYDDPLEAAQLHGGCGAWGVLFTGLFAKAEYVDEIYGIGRPYGLLMGGGGKLFAAQVIEVLVVCVWVTVTMAPLFYGLNKMKLLRISRDDETAGMDLTRHGGFAYAYHDEDDDESIRKLGFMMGRIEPAGSVTPSATGHDSQMPTTTPPV* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1598 1021 Gene3D Ammonium transporter AmtB like domains 528 993 IPR029020 -
Tpr1g1598 1021 TIGRFAM amt: ammonium transporter 551 976 IPR001905 GO:0008519|GO:0016020|GO:0072488
Tpr1g1598 1021 Gene3D - 65 199 IPR012340 -
Tpr1g1598 1021 Pfam Exosome complex exonuclease RRP4 N-terminal region 8 46 IPR025721 -
Tpr1g1598 1021 Gene3D - 7 62 - -
Tpr1g1598 1021 PANTHER AMMONIUM TRANSPORTER 508 1009 - -
Tpr1g1598 1021 Pfam Exosome component EXOSC1/CSL4 101 142 IPR019495 GO:0000178|GO:0003723
Tpr1g1598 1021 PANTHER AMMONIUM TRANSPORTER 508 1009 - -
Tpr1g1598 1021 SUPERFAMILY Ammonium transporter 548 957 - -
Tpr1g1598 1021 CDD S1_CSL4 70 160 - -
Tpr1g1598 1021 SUPERFAMILY Ribosomal L27 protein-like 8 45 - -
Tpr1g1598 1021 Pfam Ammonium Transporter Family 554 976 IPR024041 GO:0008519|GO:0016020|GO:0072488
Tpr1g1598 1021 ProSitePatterns Ammonium transporters signature. 707 732 IPR018047 GO:0008519|GO:0016020|GO:0072488
Tpr1g1598 1021 SUPERFAMILY Nucleic acid-binding proteins 71 191 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1598 Tpr-Chr1 14905905 14922671 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1598 504 1008 Inorganic Solute Cotransporters AT1G64780 76.953 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1598 - - mnt:21407213 1385.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1598 1 14905905 14922671 Tpr1g1598 1 14905905 14922671 ECH