Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1596 ATGCACTCAAACTCAACCCTTCAACAGTACGAGATTAAGGTTAGGGAACTTTTTCTTAGGCAGAATGTGATGGAATTGGGTCAAGAGGTTGGGATTATGAAGAAACAAAAGGAAGCTAGTTGGCATGTTAGGATGCTTACTAGGGAAATTAGGAAGTCTCTTGATAAACATACTATTTTGTATACTACTCTTGTCGAGCTTTCTAAGGCTTTGGATTTGCATAATTGTGCTGTTTGGATGCCGAATGATGATAGGAGAGAGATGTATTTGACTCATGAATTGAAATCGGATTCTGGTAAGAGTTTTCATCATAATTCTATTCCTGTGAATGACCCTGATGTGTTAGAGATAAGGAAAACTAAAGGGGTTAGGATTTTGAGGCCGGAGTCTAAATTAGGAGCTGCGAGTAGTGGTGGGGGTAGTACTGAGGAGTTGGGTGCTGTAGCAGCTATTCGTATGCCGATGCTTCATGTTTCGAATTTCAAAGGAGGGACTCCAGAGTTGGTTGATACATGTTATGCCATACTGGTTTTGGTTCTTCCGAGTTCGAACTCTAGGGATTGGACTGCTCCAGAGATGGAGATAGTTGAGGTTGTTGCTGATCAGGTGGCAGTAGCACTTTCTCATGCGTCGGTTCTCGAAGAGTCTCATTTAATGAGACAGAAACTTGAAGAGCAAAACCGAGCGTTGCAGCACTCTCAAAAGAATGCAATGATGGCGAGCCAGGCTAGGAAGTCATTCCAGACAGTGATGAGCCACGGACTGAGGAGGCCTATGCATTCGGTTGTCGGGATGCTTTCATTGTTTCAAGAGGGTAATATGAATCCCGAACAACAGATTATTGGTGACACAATGTTGAAAGTAGGCAACGTGCTCACGAGTTTAGTAAACGATGTAATGGATATTTCTGACAATAAAAATGGTGGCCTCCAGTTAGAGACGAAACCTTTCCTTCTACATTCCATGTTGAGGGAAGCTGCTTGTATTGCCAAGTGCTTGTGTGTGTATCAAGGATTTGGTTTCCAAACCGATGTCCAGAAATCTTTGCCTGAAAAAGTTTTAGGCGACGAAGCAAGGACTTTTCAAGTAATTATGCATATTATTGGCTATTTATTGAACACATGTGATCAAGGGAATCTTGTTTTTCGGGTTTTGCTTGCAAGTGATGGTGGTGATAAGGATGACAAAAAATTTGGTATATGGAAATCAAGCAGCACAACTGAGTATGTAAATATAAAATTTGATTTTCAGATCACTGGTAGTTCTCAGTCAGATGAATCAATTTCGACAAAACAGCAAATTGGTAGGAGGCTGAATCACAACAGTGAATCTAAGGAGGGTCTGAGCTTTAACATGTGCAGGAAATTGGTACAGATTATGCAAGGTACTATATGGATATTACCAAACTCTCGAGGTTTGGTGCAAGGCGTGTCACTTCTTCTCAAGTTTCAGACAGGACCATTACTTGAAAGATACATGCTTGCACCTAAAGATTATTCAAATTCACAGTTTGGTGGCCTCAATATTTTGTTAGCAGACGATGACGGTTTAAACAGGATCGTGACGAAGAAGCTACTCGAGAGGCTCGGTTGTCAAGTAACAACAGTTTCATCAGGATACGAGTGTCTGGGTGCTATAAGTGGCTCTGGTGGTAACTCTTTCAAAATTCTCATGTTGGATATTCACATGCCTGAAATGGATGGTTTTGAAGTCACGATTAGGATCAGAAAGTTCAACGGCCCTAATTGGCCTTTGATCATAGCTCTTATAGCAAATGCAGAAGAGCAAGTCAAGGATAGATGCATGCTGGCGGGAATGAATGGAGTGATTCGAAAACCAATCCTCCTTCATCAGATAGCGGATGAACTTAGAACTGTCCTACATCGTGCGGGTGAAAAACTGTGA 1905 0.4163 MHSNSTLQQYEIKVRELFLRQNVMELGQEVGIMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKALDLHNCAVWMPNDDRREMYLTHELKSDSGKSFHHNSIPVNDPDVLEIRKTKGVRILRPESKLGAASSGGGSTEELGAVAAIRMPMLHVSNFKGGTPELVDTCYAILVLVLPSSNSRDWTAPEMEIVEVVADQVAVALSHASVLEESHLMRQKLEEQNRALQHSQKNAMMASQARKSFQTVMSHGLRRPMHSVVGMLSLFQEGNMNPEQQIIGDTMLKVGNVLTSLVNDVMDISDNKNGGLQLETKPFLLHSMLREAACIAKCLCVYQGFGFQTDVQKSLPEKVLGDEARTFQVIMHIIGYLLNTCDQGNLVFRVLLASDGGDKDDKKFGIWKSSSTTEYVNIKFDFQITGSSQSDESISTKQQIGRRLNHNSESKEGLSFNMCRKLVQIMQGTIWILPNSRGLVQGVSLLLKFQTGPLLERYMLAPKDYSNSQFGGLNILLADDDGLNRIVTKKLLERLGCQVTTVSSGYECLGAISGSGGNSFKILMLDIHMPEMDGFEVTIRIRKFNGPNWPLIIALIANAEEQVKDRCMLAGMNGVIRKPILLHQIADELRTVLHRAGEKL* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1596 634 SUPERFAMILY CheY-like 504 629 IPR011006 -
Tpr1g1596 634 CDD HATPase_ETR2_ERS2-EIN4-like 349 481 - -
Tpr1g1596 634 Pfam Response regulator receiver domain 509 621 IPR001789 GO:0000160
Tpr1g1596 634 SMART HisKA_10 243 308 IPR003661 GO:0000155|GO:0007165
Tpr1g1596 634 Pfam GAF domain 57 207 IPR003018 GO:0005515
Tpr1g1596 634 Gene3D - 307 485 IPR036890 -
Tpr1g1596 634 Coils Coil 213 240 - -
Tpr1g1596 634 CDD HisKA 241 303 IPR003661 GO:0000155|GO:0007165
Tpr1g1596 634 Gene3D - 208 305 - -
Tpr1g1596 634 Gene3D - 507 633 - -
Tpr1g1596 634 ProSiteProfiles Histidine kinase domain profile. 250 487 IPR005467 -
Tpr1g1596 634 SMART gaf_1 55 217 IPR003018 GO:0005515
Tpr1g1596 634 Gene3D - 39 207 IPR029016 -
Tpr1g1596 634 ProSiteProfiles Response regulatory domain profile. 508 627 IPR001789 GO:0000160
Tpr1g1596 634 PANTHER TWO-COMPONENT HISTIDINE KINASE 11 627 - -
Tpr1g1596 634 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 312 469 IPR036890 -
Tpr1g1596 634 SMART REC_2 507 623 IPR001789 GO:0000160
Tpr1g1596 634 CDD REC_ETR-like 507 623 - -
Tpr1g1596 634 PANTHER ETHYLENE RECEPTOR 11 627 - -
Tpr1g1596 634 SUPERFAMILY GAF domain-like 58 210 - -
Tpr1g1596 634 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 228 308 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1596 Tpr-Chr1 14873208 14878012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1596 13 632 Miscellaneous Gene Families AT3G04580 58.003 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr1g1596 GAF 2.7e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1596 K14509 - gmx:100101892 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1596 1 14873208 14878012 Tpr1g1596 1 14873208 14878012 ECH