Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1583 ATGACGACACCACCTTCTTCATCATCTTCTCAATCGCAATTCGTATATTCCAACGCCCCTTACTTCCCCGTTCCCTTCCATCTTCAACAACCCGCAACCACCACTCACTACGCCGCCGCACCGTACGTTGCCACCCCTGCTGTTCAACTTCCTCCGCCACCAGTCGTCGGTCCCGTTCCACCTCCGGCTGCTTACTCCGTTCCGCAATATCAGGCACAACAGTTATTTGAGAGGGATGCACAGATAATTACGCCGGAGGCTCTTGAGAATGTGAAGGCAGCTATTGCGAGTAGCGACGTTGAGCATAAAGCTGAGACGAAAAAGAAAGCGGTTCCCCGTAAAGCTGCTGGACAATCTTGGGAGGATCCTATACTTGCTGAGTGGCCTGAAGATGATTATCGACTCTTCTGCGGTGATCTTGGTAATGAAGTCAACGACGATGTTCTTTCAAAAGCATTCACAAGATTCCCTTCTTTTAACATGGCTAGAGTTGTTAGAGATAAGCGGACTGGAAAAACAAAGGGTTATGGATTTATAAGCTTTGCCAACCCTGCTGATCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCAATAAAGCTACGCAAGAGTAAGTGGAGGGAGAGAACTGATTTTGACGCACTGGAGAAACAGAAGAACCATATTCAGAAGAAACCGAAAATGTCAAGGAAGGGTATTCTGCACAAGTGA 726 0.4697 MTTPPSSSSSQSQFVYSNAPYFPVPFHLQQPATTTHYAAAPYVATPAVQLPPPPVVGPVPPPAAYSVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKAETKKKAVPRKAAGQSWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAALKEMNGKYVGNRPIKLRKSKWRERTDFDALEKQKNHIQKKPKMSRKGILHK* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1583 241 Gene3D - 73 207 IPR012677 -
Tpr1g1583 241 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 30 241 - -
Tpr1g1583 241 PANTHER RNA-BINDING PROTEIN 42-LIKE 30 241 - -
Tpr1g1583 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 211 IPR000504 GO:0003723
Tpr1g1583 241 SUPERFAMILY RNA-binding domain, RBD 116 213 IPR035979 GO:0003676
Tpr1g1583 241 SMART rrm1_1 134 207 IPR000504 GO:0003723
Tpr1g1583 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 205 IPR000504 GO:0003723
Tpr1g1583 241 CDD RRM_RBM42 127 209 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1583 Tpr-Chr1 14724704 14728888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1583 82 213 Eukaryotic Initiation Factors Gene Family AT1G71770 24.088 1.04e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1583 K25079 - gmx:100791946 366.311