Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1577 ATGTCTTCATCTTATCCCTCGTCCTCGATGCAGGCTGCATCAATTAATTCCAACATCAGAAGTGTTGGGCACATGTTTTCAACCTCTGCTGATCAACTCCCTGATAACGTCCCGTTTGCCTCTGCTTCAGAAATACATTCTACGCCATTCCCTCAAGAAAGTGATGTTCTTTCCTGGGGAACAGATCCATTTGATGATATTCTTCAGTTTCCTGATGCTCCCATCCAGAATGATCATGTGGAATACAGTGGTTCCGACGTCTTAGGTGGAAACGCCAAAACAACTGATTTCAAGGAGTGGGTTGATCAGTTAATGTCTGTTGATGAATCTCCTCAGCCGAATTGGAATGAACTTCTCAGTGATAACAATATAGCAGAACAGGATCCAGAAATACAGCCTTCTCTCTTGATGCAAGAGACCCAGGTTTCACTGCAGCAGTATGTACCATCTAAAGAAGTTAATGGTCTTCCTAATTCTTCTGTGTCGACTACATCACAATCTAAGCCTAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAGAAGGCTACACCAAAGGGTGTCTTGAACTTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCATCTGCAGAAATATAGAACTGCCAGATACAAACCGGAACCATCAGAAGGAATTGAAGAGAAGAAGTTGACTTCAATCGATGAAATGACAACTATAGACTTAAAAACACCTAAGGGAATTACTGAAGCATTGCGGTTGCAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAATTTACAGATTCAAATTGAGAACCAAGGGAAACATCTACAAATGATGTTTGAGCAACAGATCAAGTCGAATGATCCTTCTGCTCCACTATCAAGCGTAGTGGCACCTCCAACAGTTGAAAATTTAGAAAACAAAAATGAAGGTCATGAGAAACTTGGAACAAATGGTAGCACTCCAGATAACAAGCCTGAAGGAAGTTCCCAGGATACAAGCACAAAGCAAAAGGGAGATGATGCTAAAGTTACTGATGAACTTGAGCTGGAAGAAGGCCAATTTGTCGCACCACCCTCAAAACGAGCGAAGACTGACGAGTAA 1146 0.4241 MSSSYPSSSMQAASINSNIRSVGHMFSTSADQLPDNVPFASASEIHSTPFPQESDVLSWGTDPFDDILQFPDAPIQNDHVEYSGSDVLGGNAKTTDFKEWVDQLMSVDESPQPNWNELLSDNNIAEQDPEIQPSLLMQETQVSLQQYVPSKEVNGLPNSSVSTTSQSKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPEPSEGIEEKKLTSIDEMTTIDLKTPKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKHLQMMFEQQIKSNDPSAPLSSVVAPPTVENLENKNEGHEKLGTNGSTPDNKPEGSSQDTSTKQKGDDAKVTDELELEEGQFVAPPSKRAKTDE* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1577 381 Coils Coil 256 276 - -
Tpr1g1577 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 225 IPR017930 -
Tpr1g1577 381 MobiDBLite consensus disorder prediction 328 347 - -
Tpr1g1577 381 Pfam MYB-CC type transfactor, LHEQLE motif 255 299 IPR025756 -
Tpr1g1577 381 SUPERFAMILY Homeodomain-like 166 222 IPR009057 -
Tpr1g1577 381 MobiDBLite consensus disorder prediction 317 381 - -
Tpr1g1577 381 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 6 379 - -
Tpr1g1577 381 Pfam Myb-like DNA-binding domain 170 221 IPR001005 -
Tpr1g1577 381 MobiDBLite consensus disorder prediction 348 364 - -
Tpr1g1577 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 6 379 IPR044848 GO:0003700
Tpr1g1577 381 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 168 222 IPR006447 GO:0003677
Tpr1g1577 381 Gene3D - 167 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1577 Tpr-Chr1 14667294 14671675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1577 17 297 G2-like Transcription Factor Family AT4G28610 49.669 2.91e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr1g1577 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1577 - - mtr:MTR_1g080330 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1577 1 14667294 14671675 Tpr1g1577 1 14667294 14671675 ECH
Tpr6g3342 6 36060877 36072489 Tpr1g1577 1 14667294 14671675 PCT
Tpr6g0151 6 1289391 1298962 Tpr1g1577 1 14667294 14671675 PCT