Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1576 ATGCCTGTTAGTCCAAGGGTTATTATGGCCTTTAATGCTATGGAGGCCTTAGGAATCTCGAAGAAAGAGGTGAAACCAGTGTTGATAAATTTGCTTAAACTGTATGATAACAAATGGGAGCTTATTGAAGACGACAACTATCGGGCACTTATAGATGCATACTTTGAGTCAAAGGAAGATAAGTTTTTTTCTGATACCTTATTATATTCTTTCTGAAAGCAAGAAGAACATAAGAGAAAAGCTCCAATAAGTTGTCATGATGGTGAAAGACCAAAACAGAAACGTCACTTGGTAGATACAGACAACCAGGTTTCATCAGCTGACAACTCAAGACAAGTGTTGAGTGACGAAAAAAGGATCCCAAGTTTACCTCACATGACTGCTAGAGATAGAAAAAGTTATCCTGGGGCAGCATCATCTGCAGGGCATCACGAGGACCCAATTGATGAACCTATAAATCCTTGTATTCAGAGGAAAAACATGTCAACTGATCACTATCAGAAGAAGCTTATAACATCAGGAACTGAGAAACCTAAGCTTCATCTTGGATCTGTTTCGACAAGTTACAATGGTTTGCCTGATGCTTCAAATGGAAATCACTCTATCAAATCCCTCACAGAGGTGTATCAGAATACACACAAGATAGAAGATAAGTCAACATGCAATAATAACACCAGAACCAGTAAGGGTAATATTGATATTGCTTCTTCACCTTTGGGAGAAGTTAAAATTTCTTTAAATTTTGATGCTGCAATCAGGATGGGCTTGAATTTGAATCGAAAGGGGTCAACGCAAGCTCCTGCTGAGGATAAAAAGAAATCCTTTCGATATGTCGATGACATAACAAAAGGTTCAGAAAATGTTAAAATATCATTATTAGATGAAACTGAAAGTGAGGATTTTCCGAAGTTTAATTACATTCCATGTAATACAACGTATCAAAGTGCTAATGTCAACATTGCACTTGCTCGGATTGCGGATCAAGGTTGCTGTGCTGATTGTTCAGGCGACTGCCTTTCCTTACCATTTCCTTGTGCATGCTCTCAAGACACTGGTGGGGAGTTTGCTTACTCTTCACAAGGTTTATTGAAAGAAAAGTTTTTAAAAGATTGCATGTCTATGATAAAGGAACCTCAAGATCATCATTATGTGTACTGTAATGAATGCCCAATTGAGAGGTCTAAGAATGAGACGAAACCTGAACCATGCAAGGGACATCTAGTTAGGAAGTTTATAAAGGAGTGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGGGGTATAAGCCGTAAATTGCAGGTGTTCTTGACTGAAGAAGGAAAGGGCTGGGGCGTTAGACCACTAGAAGATTTGCCCAAGGGATCCTTTGTATGTGAATACGCCGGGGAAATTTTAACAAATACAGAATTGTATGAAAGGATTGTACTAGGTACCGGCAATGACAGACATACATATCCTGTAACGCTTGATGCAGACTGGGGCTCAGAAGTGGGATTAAAGGATGAAGAGGCATTATGCTTGGATGCAACATATAATGGGAATGTGGCAAGATTCATCAATCATAGATGCTATGATTCAAATCTGATAGATATTCCTGTTGAAGTGGAGACACCTGACCGCCACTATTATCATCTTGCCCTCTTTACAAACAGAGATGTGAGTGCATACGAGGAGTTGACATGGGATTATGGTATTGACTTTGATGATCATACCCATCCTATTAAAGCATTCAAATGTTGTTGTGGAAGCGCTTTCTGCCGTGATAAGAAACAAAAAGGAACTAGAAAACTCAAGCATACATATATAGAGTAG 1830 0.3929 MPVSPRVIMAFNAMEALGISKKEVKPVLINLLKLYDNKWELIEDDNYRALIDAYFESKEDKFFSDTLLYSF*KQEEHKRKAPISCHDGERPKQKRHLVDTDNQVSSADNSRQVLSDEKRIPSLPHMTARDRKSYPGAASSAGHHEDPIDEPINPCIQRKNMSTDHYQKKLITSGTEKPKLHLGSVSTSYNGLPDASNGNHSIKSLTEVYQNTHKIEDKSTCNNNTRTSKGNIDIASSPLGEVKISLNFDAAIRMGLNLNRKGSTQAPAEDKKKSFRYVDDITKGSENVKISLLDETESEDFPKFNYIPCNTTYQSANVNIALARIADQGCCADCSGDCLSLPFPCACSQDTGGEFAYSSQGLLKEKFLKDCMSMIKEPQDHHYVYCNECPIERSKNETKPEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGISRKLQVFLTEEGKGWGVRPLEDLPKGSFVCEYAGEILTNTELYERIVLGTGNDRHTYPVTLDADWGSEVGLKDEEALCLDATYNGNVARFINHRCYDSNLIDIPVEVETPDRHYYHLALFTNRDVSAYEELTWDYGIDFDDHTHPIKAFKCCCGSAFCRDKKQKGTRKLKHTYIE* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1576 608 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 3 601 - -
Tpr1g1576 608 Pfam SET domain 447 569 IPR001214 GO:0005515
Tpr1g1576 608 Pfam Pre-SET motif 280 427 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr1g1576 608 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 GO:0018024
Tpr1g1576 608 ProSiteProfiles Pre-SET domain profile. 329 432 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr1g1576 608 MobiDBLite consensus disorder prediction 79 100 - -
Tpr1g1576 608 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 607 IPR025776 -
Tpr1g1576 608 SMART preset_2 277 419 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr1g1576 608 Gene3D - 1 60 IPR043017 -
Tpr1g1576 608 SMART set_7 435 575 IPR001214 GO:0005515
Tpr1g1576 608 ProSiteProfiles SET domain profile. 435 569 IPR001214 GO:0005515
Tpr1g1576 608 CDD SET_SETDB-like 301 569 - -
Tpr1g1576 608 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 3 601 - -
Tpr1g1576 608 MobiDBLite consensus disorder prediction 79 155 - -
Tpr1g1576 608 Gene3D SET domain 280 594 IPR046341 -
Tpr1g1576 608 SUPERFAMILY SET domain 287 592 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1576 Tpr-Chr1 14653944 14661801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1576 411 592 C2H2 Transcription Factor Family AT2G23740 40.426 2.82e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr1g1576 Pre-SET 4.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1576 - - mtr:MTR_1g080340 962.985