Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1571 ATGGAGGGAATAACTGAGGATGAAGTGGTGGATGTCGAGAGTGCTTCTGGTGGTTCTGTAAATGATGACTCAGATGATGAGGGATCTTTGCCTTCTGAAATTGATGACAAATTGCATCTCGAGGAACCTCTAACTGAGGCGGAGATAGAAGACCTTATTTCTGAGCTATTAGAAGTGGAGAGTAAGGCTGCGGAAGCCCAAGAAACTCTTGAAGAAGAGTCTCTTGCTAAAGTGGAAAGTGAAGTTAGACAAGAACTGCAGCAAACGCTACAGGGGAATGATCTGGAAAATGCTGTTGCTGATGAGATGGCTACTTTTAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTTCTCACTTACTGGAACAACTTGATGGGGCTGGAATTGAACTCCCAAGTCTTTATAAGTTGATCGAAAGAGAAGCTCCAAGTGGTTGTTGTACTGAAGCATGGAAAAAGCGAAATCATTGGGTTGGGTCTCAGGCAACTACTGAAATTGCTACATCAGTTTCTGATGCTGAGAAATATCTACAAATAAACAGACCTGTTAGAAGGCGTCATGGCAAATTGTTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAGAAAATTTCTCCTGAAACTCTGGAACCGGGGAAAAAAGAAACAGAGGGGGACTGGGATGTGTTCAATAAAATAATTTCTGATGGAAGTGGCACCGATGCCTCATTTGGCAGTAAGACTTGGGCTTCTGTTTATTTAGCCAGCACTCCACAGCAAGCTGCCTTAATGGGACTTGAATTTCCTGGAGTTAATGAGGTGGAGGAAATTGATGATGTTGATGACAATTCTACTGATCCATTTGTTGCAGCAGCGGTTGCAAATGAAAGAGAATTGGATCTTTCTGAGGAGCAAAGTAGACATTTTAAAAAGGTCAAAGAAGAGGATGATGCAATTGTTGATAAGAAGCTTCAAATACGTTTGAAACACAGGAGGCATCATAAGAAAAGTAAACAGCGAGAAACAAGCACACATATCCTGTCGATGGAGAGCCATGTACAGAAGTCTTCATCTGTTGATCAATTTAACCCTGATACGAATGAAGGAACTAGAGTTGAAGGGGACATTGTGTCTGACAATAACAAGGCTGCATGTTTGAATATGGAGGCCGATAAAATTAACGGTTTTGATGCCAGTTTTCATCTTGACAAAGAAAATCCTATGGGAGATGGTAATTTGTCAGATCCTCCCAAATCTTCATTGGGTGATGTTATTGAACAGAGAGGAACCAAACGTCTAAATGATGGCGAGCTTAAAGGCCGGACTGATACCGCCAACAGCGACAATGATATACCCGCTTCCAGTTCTGATAGTAGCGATTCAGATGATTCAGACGATTCAGATGATTCAGACGATTCAGATGATTCAGATGTTTCAGAGATAAATGTTACAACAAGCACTAAACGAAGACGCAAAAAGAAGATTAGGAGGATACTTGATGACACAGAATTAGGAGAAGAGACAAAAAAGAAGATAGCAATTGAAAAGGAACGTCAAGAACGCCTGAAGTCTTTGCGAGTGCAGTTTTCTGCTTCATCATTTGACAATAGCTCGGCTGGCTGTAATGGGAGTTCATCTGAAGGTGCAAGTGTTGAAATTCTTGGTGATGCGCTGGCAGGTTATATAGTGAATGTTGTGAGAGAGAAAGGTGAAGAAGCAGTTAGAATACCTCCGAGCCTTTCAGCAAAGCTGAAAACTCATCAGATTGCTGGAATAAGGTTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTTAAGTCTGGAGATAGAGGTCTAGGGTGTATTCTAGCTCATACCATGGGCCTTGGTAAAACATTTCAGGTAATAGCTTTCTTGTATACGGCGATGAGAGTTGTTGATTTGGGTTTAAGAACTGCACTTATAGTCACACCTGTCAATGTGCTACATAATTGGCGGACGGAGTTCATCAAATGGGCACCATCAGAATTAAAGCAACTCAAGGTCTTCATGCTGGATGATGTATCAAGAGATAGGAGGGCACAATTGCTCGCTAAATGGAGAGCGAAAGGTGGTGTATTCTTAATTGGCTATGCTGCATTCCGGAATTTGTCTTTTGGAAAAAAGGTGAAAGACCAGGAGATGGCCAGGGAAATTTGCCATGCTTTGCAGGATGGCCCCGACATTCTTGTGTGTGACGAAGCCCACATCATTAAAAATACTAATGCCGATGTTACTCATGCCTTGAAACAAGTAAAGTGCCAGAGAAGAATTGCGCTTACAGGATCACCTCTTCAAAACAATCTTATGGAATATTATTGTATGGTTGATTTTGTACGAGAAGGTTTTCTTGGAAGCAGTCATGAGTTTAGGAACCGCTTCCAAAATCCTATAGAGAATGGTCAACACACTAATTCCACCCTGACTGATGTAAAAATTATGAACCAAAGGTCTCACATCCTCTATGAACAATTAAAAGGTTTTGTTCAAAGAATGGATATGAATGTTGTGAAGAAGGACCTACCGCCCAAAACTGTTTTCGTGATAACAGTCAAGCTTTCTCCCCTACAAAGAAAATTGTACAAGAGATTCCTTGACGTGCATGGGTTCACTAATGTCAAGGAAAATCATGAAAAATTAAGAAAGAGGAGTTTTTTTGCTGGATATCAGGCATTGGCTCGGATATGGAACCACCCTGGGATCTTGCAATTGACAAAAGAAGACAAGGACTGTGTAAGACCTGAAGATGCCGTTGAAAATTTCCTTGTTGATGATATCTCAAGTGATGAAAATTCCGATTATAATGTGCTTGCTGGAGAGAAATTGAAGTATACAAATGATTTGATGCAAAGGAAGGATGGTAATGGCTATTTCATAAAGGGCTGGTGGAAAGATATTCTTCATGAAAAAATTTATAAAGAGCTTGATCAAAGTGGCAAAATGGTTTTGCTAATTGATATACTTACCATGAGTTCTGACGTGGGCGACAAGGTGTTAGTTTTTAGTCAGAGCATACCAACCTTAGACCTCATAGAGCTTTATCTCTCAAAGTTACCACGACGTGGCAAACGAGGGAAACTGTGGAAGAAGGGAAAAGACTGGTATAGGCTGGATGGAAGGACGGAGAGCTCAGAAAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTCAAATAAAAGGGTAAAATGCACACTAATTTCGACCAGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTTCAGGCTATCTATCGAGCTTGGAGGTATGGGCAGAAAAAGCCTGTGTTTGCTTATCGGTTGCTGGCTCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTTACCAAAGAGGGGCTTGCTGCTAGAGTGGTCGATAGACAACAGGTGCATAGGACCATATCTAAAGAAGAAATGCTGCATCTCTTTGAGTTTGGTGATGAGGAGAATCCTGAGACTTTGGCCGAGTTAAGTAAATATGATGGGCTTACTTGTGAACAAAATAATCCGATTTTGGCTGGGGATTCACTGAAACATACATTACCACATTCAAATGGAAGCAGTTATTCTGATAAGTTGATGGAAAGCTTACTAGGCAAACATCATCCCCGGTGGATTGCCAATTATCATTTACATGAATCCCTGTTACAAGAAAACGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTGTATCGCAAATCGTTGGAATGGGAAGAAGTTCAGAGAGTACCGATTGGTGAGACCGTGCCTGAACAAAAGCCAGAAGAGTCAAAAGCGGAAGAACCCCAAGAATCAGGTTGGACCCTTTCAACTAAGCTTAGAAATCGTTTCACAAAGCGGCAATGCACCAACCTAGCGCACTTGCTGACACTTAGAAGCCAAGGAATAAAATTTGGGCGCAGTACAGTCTGTGGCGAATGTGCCCGGCCGATAAGGTGGGAAGACTTGAAGATTAAATAG 4032 0.4144 MEGITEDEVVDVESASGGSVNDDSDDEGSLPSEIDDKLHLEEPLTEAEIEDLISELLEVESKAAEAQETLEEESLAKVESEVRQELQQTLQGNDLENAVADEMATFKEEWEAVLDDLETESSHLLEQLDGAGIELPSLYKLIEREAPSGCCTEAWKKRNHWVGSQATTEIATSVSDAEKYLQINRPVRRRHGKLLEEGASGFLQKKISPETLEPGKKETEGDWDVFNKIISDGSGTDASFGSKTWASVYLASTPQQAALMGLEFPGVNEVEEIDDVDDNSTDPFVAAAVANERELDLSEEQSRHFKKVKEEDDAIVDKKLQIRLKHRRHHKKSKQRETSTHILSMESHVQKSSSVDQFNPDTNEGTRVEGDIVSDNNKAACLNMEADKINGFDASFHLDKENPMGDGNLSDPPKSSLGDVIEQRGTKRLNDGELKGRTDTANSDNDIPASSSDSSDSDDSDDSDDSDDSDDSDVSEINVTTSTKRRRKKKIRRILDDTELGEETKKKIAIEKERQERLKSLRVQFSASSFDNSSAGCNGSSSEGASVEILGDALAGYIVNVVREKGEEAVRIPPSLSAKLKTHQIAGIRFMWENIIQSIRKVKSGDRGLGCILAHTMGLGKTFQVIAFLYTAMRVVDLGLRTALIVTPVNVLHNWRTEFIKWAPSELKQLKVFMLDDVSRDRRAQLLAKWRAKGGVFLIGYAAFRNLSFGKKVKDQEMAREICHALQDGPDILVCDEAHIIKNTNADVTHALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTNVKENHEKLRKRSFFAGYQALARIWNHPGILQLTKEDKDCVRPEDAVENFLVDDISSDENSDYNVLAGEKLKYTNDLMQRKDGNGYFIKGWWKDILHEKIYKELDQSGKMVLLIDILTMSSDVGDKVLVFSQSIPTLDLIELYLSKLPRRGKRGKLWKKGKDWYRLDGRTESSERQKLVERFNEPSNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDEENPETLAELSKYDGLTCEQNNPILAGDSLKHTLPHSNGSSYSDKLMESLLGKHHPRWIANYHLHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPIGETVPEQKPEESKAEEPQESGWTLSTKLRNRFTKRQCTNLAHLLTLRSQGIKFGRSTVCGECARPIRWEDLKIK* 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1571 1343 MobiDBLite consensus disorder prediction 347 364 - -
Tpr1g1571 1343 MobiDBLite consensus disorder prediction 1 42 - -
Tpr1g1571 1343 MobiDBLite consensus disorder prediction 455 474 - -
Tpr1g1571 1343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 566 834 IPR027417 -
Tpr1g1571 1343 SMART ultradead3 576 797 IPR014001 -
Tpr1g1571 1343 CDD SF2_C_SNF 977 1120 - -
Tpr1g1571 1343 MobiDBLite consensus disorder prediction 347 371 - -
Tpr1g1571 1343 MobiDBLite consensus disorder prediction 1269 1290 - -
Tpr1g1571 1343 Coils Coil 107 127 - -
Tpr1g1571 1343 Gene3D - 845 1188 IPR027417 -
Tpr1g1571 1343 MobiDBLite consensus disorder prediction 424 440 - -
Tpr1g1571 1343 Pfam SNF2-related domain 603 904 IPR000330 GO:0005524|GO:0140658
Tpr1g1571 1343 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 989 1157 IPR001650 -
Tpr1g1571 1343 MobiDBLite consensus disorder prediction 424 489 - -
Tpr1g1571 1343 Pfam Helicase conserved C-terminal domain 985 1109 IPR001650 -
Tpr1g1571 1343 Gene3D - 553 834 IPR038718 -
Tpr1g1571 1343 PANTHER RAD54-LIKE 29 358 IPR044574 GO:0016887
Tpr1g1571 1343 PANTHER RAD54-LIKE 428 1340 IPR044574 GO:0016887
Tpr1g1571 1343 SMART helicmild6 1012 1109 IPR001650 -
Tpr1g1571 1343 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 785 IPR014001 -
Tpr1g1571 1343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 840 1175 IPR027417 -
Tpr1g1571 1343 Coils Coil 49 76 - -
Tpr1g1571 1343 PANTHER RAD54-LIKE 428 1340 - -
Tpr1g1571 1343 PANTHER RAD54-LIKE 29 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1571 Tpr-Chr1 14583209 14608282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1571 610 1162 RAD5 or RAD16-like Gene Family AT5G43530 23.963 9.44e-31 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr1g1571 SNF2_N 1.3e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1571 K10779 - egt:105955484 1630.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1571 1 14583209 14608282 Tpr1g1571 1 14583209 14608282 ECH