Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1566 ATGGGGGATCCAGTGAATATCATTGTGGGTTCTCATGTCTGGGTGGCAGACCCAGAGGAAGCTTGGGTTGACGGACAGGTATCAAAAATCAATGAAAAGGATGCTGAAATTGTAACTACCCATGGAAAAAAGGTTGTTGCAAAGTTATCAAAAATATATCCTAAGGATATGGAAGCTCTTCCTGGTGGAGTGGATGATATGACTAAATTGTCCTATTTGCATGAGCCTGGAGTTCTGCAGAACTTAAAAGTTAGATATGAATTGAATAAAATATATACATATACCGGAAATATCCTGATTGCCATAAATCCATTCCAAAGGCTGCCTCATATTTATGGTACACACATGATGCAACAATACAAGGAAGCGCCACCTGGAGAATTAAGCCCTCATGTATTTGCAGTAGCTGATGTTGCATATAGAGCAATGGTTAATGAAGGGAAAAGCAATTCTATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATTCCTAGCTTTCTTAGGTGGTAGATCTGCGACTGAAGGAAGAACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGCAATGCTAAAACTGCCAGGAATAACAATTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGACGAGAGTGGAAGAATCTCAGGAGCAGCCATCCGAACATACCTTCTAGAGAGATCTCGGGTCTGTCAAGTTAATGATCCTGAAAGAAACTACCACTGCTTTTATCTCCTTTGTGCCGCACCACAGGAGGAAATTGAGAAATACAAATTAGGAAATCCTAAATCATTTCACTACCTTAACCAGTCACAATGCTATGAACTTGCCGATGTAAATGATGCTCATGAGTATCTTGCCACCCGCAAAGCTATGGGTATTGTTGGAATTAATCAAAAAGATCAGGAAGCCATTTTCAGAGTTGTTGCTGCAATTCTTCATATTGGTAATATTGATTTTGCCATAGGAAAGGAAATTGACTCGTCAATTCCAAAAGATGACAAAGCCAAATTCCACCTGAAAACAGCTGCTGAGCTTCTGATGTGTGATGCTGATGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACTCCTGAAGAAGTTATAAAACGGAGCCTCGACCCAGGATGTGCAACAGTCAGTAGAGATGGACTGGCAAAGACAATTTATGCTCGGCTGTTTGATTGGCTGGTAGACAAGATTAATAATTCAATTGGACAAGACCCCAATTCTAAATTTTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATTGAACAGTTTTGAGCAGTTCTGCATTAACTTCACAAATGAAAAGTTGCAGCAACATTTCAATCAGAACTTGTTCAAAGTGGAACAAGAAGAATACACAAAGGAGCAGATCAATTGGAGCTACATTGAATTTGTGGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCAGGAGGAATCATTGCTCTCCTCGATGAAGCTTGCATGTTTCCAAAGTCAACACATGAAACATTTGCAAACAAGCTTTATCAAACATTTATGAAAAACAAGCGCTTTATTAAGCCAAAATTGTCTCAAACGGATTTCACCATTGCTCATTATGCTGGAGAGGTGACTTACCAATCTGACCAATTTTTAGACAAAAATAAGGATTATGTGGTTCCTGAACATCAAGATTTATTGATTGCTTCCAAATGTCCTTTTGTATCTGACCTTTTTCCACCACTTCCAGAAGAGACATCAAAATCTTCCAAATTTTCTTCATTAGGTTCTCGTTTTAAGATACAACTACAGCAACTAATGGAAACATTAAGTTCTACGGAACCCCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTCGAGAATGTCAACATTATGCATCAACTTCGTTGTGGTGGTGTGTTGGAGGCTATCAGAATCAGTTGTGCTGGCTACCCTACACGCCGCCCTTTCTTTGAATTTGCCAACAGATTTGGTGTCCTTGCCCCAGAGGCCATGGAAGCAAACAGCTGCAATGAAAAGAATGCTTGCCAAAAGATTCTGGAAAAGATGGGTCTTAAAGGATATCAGATTGGAACAACAAAGGTATTCTTGAGAGCTGGTCAGATAGCTGAACTAGATGCTCGGAGAGCTCAATTACTTAGTAATGCAGCAAAAGTTATACAACGTCGTGTACGGACCCATCAAGCTCGGAAACATTATCTTGCATTGCGAACGAAGACCATATATGCGCAGTCATGGTGGAGAGGAAGACTTGCATTCAAACAATATGTGAAATTAATAAAGGAGGTCTCTGCTGTGAAAATTCAAAAGAACATACGCAGATATGAAGCTAGGAAGGCTTATAAAGAACTTCATATGTCAGTACTTACTTTGCAAACAGCGTTACGGGCCATTGCTGCTCGCAAGGAGTTCAGATTTGAGAAACAGACCAAAGCTTCCATCATTATTCAGGCTCGGTGGCGGTGCCATATAGCTTCCTTACATTATAAGAGGCTTAAAAAAGGTTCAATAGTGACACAATGTAGATGGAGGGGGCGTTTAGCTAGGAGAGATCTTAGGAAACTGAAAATGGCTGCAAGAGATACTGACGCACTTCAAGATGCAAAGAGTAAGCTTGAAAAACAAGTAGAGGAACTTACTCAGCAACTCCAACTGGAAAAAGATTTAAGGGCTGCAAGAGATACCGACGCACTTCAAGATGCAAAGAGTAAGCTTGAAAAACAAGTAGAGGAACTTACTCAGCAACTCCAACTGGAAAAAGATTTAAGGGCTGCAATAGATACTGGCGCACTTCAAGATGCAAAGAGTAAGCTTGAAAAACAAGTAGAGGAACTTACTCAGCGTCTCCAACTGGAAAAAGATTTAAGGGCTGCAAGAGATACTGGCGCACTTCAAGAAGCAAAGAGTAAGCTTGAAAAACAAGTAGAGGAACTTACTTGGCGTCTCCAACTGGAAAAAGGTTTAAGGATCAATCTACAAGAATTCAAAGCACAGGAGGTAGCAAAACTGCAGAATTCATTGCAGGAGATGAAGAGAAAAGTTGATGAAACAAATGCTCTGCTCCTCAAGGAGCGAGAGAATGCAATAAAAGCTGCTATTGAAGTAGCACCTCCTGTCACTAATGAAGCGAAGGTTCTTGTTGAAGATGGAGAGACGATTAAGACACTGAAAATGGAAATTGAGATCCTAAAGACTTCACTCAAGTTAGAGAAACAGAAAGCCAAAGACTTTGAAAGAAAATATAATCAAGCTAAAATTTCTAGTGAAGAAAGAGGTAAAAGGTTAGAAGACACGGAGAAGAAGCTTCGTCAGCTCCAAGAATCAATGACCAGGTTTACTACTCAGAAGACTTTATAG 3426 0.3981 MGDPVNIIVGSHVWVADPEEAWVDGQVSKINEKDAEIVTTHGKKVVAKLSKIYPKDMEALPGGVDDMTKLSYLHEPGVLQNLKVRYELNKIYTYTGNILIAINPFQRLPHIYGTHMMQQYKEAPPGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMQFLAFLGGRSATEGRTVEQQVLESNPVLEAFGNAKTARNNNSSRFGKFVEIQFDESGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCAAPQEEIEKYKLGNPKSFHYLNQSQCYELADVNDAHEYLATRKAMGIVGINQKDQEAIFRVVAAILHIGNIDFAIGKEIDSSIPKDDKAKFHLKTAAELLMCDADALEDALCKRVMITPEEVIKRSLDPGCATVSRDGLAKTIYARLFDWLVDKINNSIGQDPNSKFLIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQNLFKVEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFMKNKRFIKPKLSQTDFTIAHYAGEVTYQSDQFLDKNKDYVVPEHQDLLIASKCPFVSDLFPPLPEETSKSSKFSSLGSRFKIQLQQLMETLSSTEPHYIRCVKPNNLLKPAIFENVNIMHQLRCGGVLEAIRISCAGYPTRRPFFEFANRFGVLAPEAMEANSCNEKNACQKILEKMGLKGYQIGTTKVFLRAGQIAELDARRAQLLSNAAKVIQRRVRTHQARKHYLALRTKTIYAQSWWRGRLAFKQYVKLIKEVSAVKIQKNIRRYEARKAYKELHMSVLTLQTALRAIAARKEFRFEKQTKASIIIQARWRCHIASLHYKRLKKGSIVTQCRWRGRLARRDLRKLKMAARDTDALQDAKSKLEKQVEELTQQLQLEKDLRAARDTDALQDAKSKLEKQVEELTQQLQLEKDLRAAIDTGALQDAKSKLEKQVEELTQRLQLEKDLRAARDTGALQEAKSKLEKQVEELTWRLQLEKGLRINLQEFKAQEVAKLQNSLQEMKRKVDETNALLLKERENAIKAAIEVAPPVTNEAKVLVEDGETIKTLKMEIEILKTSLKLEKQKAKDFERKYNQAKISSEERGKRLEDTEKKLRQLQESMTRFTTQKTL* 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1566 1141 Gene3D - 252 310 - -
Tpr1g1566 1141 Gene3D - 833 883 - -
Tpr1g1566 1141 Gene3D - 735 785 - -
Tpr1g1566 1141 Gene3D - 786 832 - -
Tpr1g1566 1141 Gene3D - 439 623 - -
Tpr1g1566 1141 Gene3D Kinesin motor domain 65 662 IPR036961 -
Tpr1g1566 1141 ProSiteProfiles Myosin motor domain profile. 62 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g1566 1141 ProSiteProfiles IQ motif profile. 832 859 IPR000048 GO:0005515
Tpr1g1566 1141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 883 IPR027417 -
Tpr1g1566 1141 ProSiteProfiles IQ motif profile. 736 763 IPR000048 GO:0005515
Tpr1g1566 1141 Coils Coil 878 912 - -
Tpr1g1566 1141 Coils Coil 951 978 - -
Tpr1g1566 1141 PANTHER MYOSIN-9 914 948 - -
Tpr1g1566 1141 PANTHER MYOSIN-9 948 980 - -
Tpr1g1566 1141 PANTHER MYOSIN-9 6 914 - -
Tpr1g1566 1141 PANTHER MYOSIN-9 980 1136 - -
Tpr1g1566 1141 ProSiteProfiles IQ motif profile. 807 836 IPR000048 GO:0005515
Tpr1g1566 1141 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Tpr1g1566 1141 PANTHER MYOSIN 914 948 - -
Tpr1g1566 1141 PANTHER MYOSIN 980 1136 - -
Tpr1g1566 1141 PANTHER MYOSIN 948 980 - -
Tpr1g1566 1141 PANTHER MYOSIN 6 914 - -
Tpr1g1566 1141 SMART iq_5 758 780 IPR000048 GO:0005515
Tpr1g1566 1141 SMART iq_5 854 876 IPR000048 GO:0005515
Tpr1g1566 1141 SMART iq_5 735 757 IPR000048 GO:0005515
Tpr1g1566 1141 SMART iq_5 806 828 IPR000048 GO:0005515
Tpr1g1566 1141 SMART iq_5 783 805 IPR000048 GO:0005515
Tpr1g1566 1141 SMART iq_5 831 853 IPR000048 GO:0005515
Tpr1g1566 1141 Coils Coil 1076 1138 - -
Tpr1g1566 1141 Coils Coil 725 745 - -
Tpr1g1566 1141 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Tpr1g1566 1141 Coils Coil 1016 1050 - -
Tpr1g1566 1141 Coils Coil 918 945 - -
Tpr1g1566 1141 Pfam IQ calmodulin-binding motif 833 853 IPR000048 GO:0005515
Tpr1g1566 1141 Pfam IQ calmodulin-binding motif 787 805 IPR000048 GO:0005515
Tpr1g1566 1141 Pfam IQ calmodulin-binding motif 859 876 IPR000048 GO:0005515
Tpr1g1566 1141 Pfam IQ calmodulin-binding motif 738 756 IPR000048 GO:0005515
Tpr1g1566 1141 Gene3D - 667 731 - -
Tpr1g1566 1141 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g1566 1141 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g1566 1141 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g1566 1141 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g1566 1141 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g1566 1141 ProSiteProfiles IQ motif profile. 855 884 IPR000048 GO:0005515
Tpr1g1566 1141 SMART MYSc_2a 57 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g1566 1141 CDD MYSc_Myo11 76 721 IPR036018 -
Tpr1g1566 1141 ProSiteProfiles IQ motif profile. 784 813 IPR000048 GO:0005515
Tpr1g1566 1141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 785 IPR027417 -
Tpr1g1566 1141 Pfam Myosin head (motor domain) 64 721 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g1566 1141 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1566 Tpr-Chr1 14510643 14533529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1566 1 939 Myosins gene family AT1G08730 78.685 0.0 1573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1566 K10357 - gmx:100816792 1572.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1566 1 14510643 14533529 Tpr1g1566 1 14510643 14533529 ECH
Tpr6g3404 6 36702207 36713922 Tpr1g1566 1 14510643 14533529 PCT
Tpr6g0157 6 1321831 1334096 Tpr1g1566 1 14510643 14533529 PCT