Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr1g1559 | ATGGCAGCCACCACCGCCAAACCCAAGAAAACCACCACTTCTTCTAAGAAACCTCTCTCTCATCCAACTTACGCAGAGATGATAACTGATGCAATCGTGAGCCTGAAAGAACGAACGGGATCAAGCCAATACGCGATAACAAAATTCATCGAAGAGAAACACAAGGAGTTATCACCAACCTACCGTAAGCTTGTTCTTCTCCATCTCAAAAAACTAGTCGCTTCTGAAAAACTCGTTAAGGTCAAAAACTCCTTCAAACTCGCACCGGCTACTAAGACTTCCGCTGCTCCGGCGAAGGCTAAATCTGCTGCGGCGAAACCTAAGGCTGCTACCAAGCCAGCCGCCAAGGCTGCTACCAAGCCAGCCGCCAAGGCTGCTACCAAGGCTAAGGCGCCTAAGGCTAAAGCTGCAGTGAAACCTAAGGCTGTAGCGAAGCCGAAAGCTAAGAGTGTTAAGGCGGCGACGCCAGTGAAGAAGGCGGTTAAGAAGGTTCCTGTGAAGAAGCCGAAGAGCGTGAAATCGCCGGTGAAGAAGGTTAAGAAGGCGAAGAAGTGA | 555 | 0.5009 | MAATTAKPKKTTTSSKKPLSHPTYAEMITDAIVSLKERTGSSQYAITKFIEEKHKELSPTYRKLVLLHLKKLVASEKLVKVKNSFKLAPATKTSAAPAKAKSAAAKPKAATKPAAKAATKPAAKAATKAKAPKAKAAVKPKAVAKPKAKSVKAATPVKKAVKKVPVKKPKSVKSPVKKVKKAKK* | 185 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr1g1559 | 184 | Pfam | linker histone H1 and H5 family | 21 | 88 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Tpr1g1559 | 184 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Tpr1g1559 | 184 | PANTHER | HISTONE H1 | 3 | 184 | - | - | |
Tpr1g1559 | 184 | Gene3D | - | 15 | 100 | IPR036388 | - | |
Tpr1g1559 | 184 | MobiDBLite | consensus disorder prediction | 90 | 184 | - | - | |
Tpr1g1559 | 184 | PRINTS | Histone H5 signature | 7 | 28 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
Tpr1g1559 | 184 | PRINTS | Histone H5 signature | 34 | 51 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
Tpr1g1559 | 184 | PRINTS | Histone H5 signature | 108 | 122 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
Tpr1g1559 | 184 | PRINTS | Histone H5 signature | 145 | 162 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
Tpr1g1559 | 184 | PRINTS | Histone H5 signature | 167 | 184 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
Tpr1g1559 | 184 | CDD | H15 | 20 | 93 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Tpr1g1559 | 184 | SUPERFAMILY | "Winged helix" DNA-binding domain | 17 | 101 | IPR036390 | - | |
Tpr1g1559 | 184 | SMART | h15plus2 | 18 | 84 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Tpr1g1559 | 184 | PANTHER | LINKER HISTONE H1 AND H5 FAMILY PROTEIN | 3 | 184 | - | - | |
Tpr1g1559 | 184 | MobiDBLite | consensus disorder prediction | 161 | 184 | - | - | |
Tpr1g1559 | 184 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Tpr1g1559 | 184 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 20 | 89 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr1g1559 | Tpr-Chr1 | 14423829 | 14424759 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr1g1559 | 22 | 87 | Single Myb Histone (SMH) Gene Family | AT1G72740 | 34.848 | 5.16e-08 | 49.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr1g1559 | K11275 | - | gmx:100810590 | 114.005 |