Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1559 ATGGCAGCCACCACCGCCAAACCCAAGAAAACCACCACTTCTTCTAAGAAACCTCTCTCTCATCCAACTTACGCAGAGATGATAACTGATGCAATCGTGAGCCTGAAAGAACGAACGGGATCAAGCCAATACGCGATAACAAAATTCATCGAAGAGAAACACAAGGAGTTATCACCAACCTACCGTAAGCTTGTTCTTCTCCATCTCAAAAAACTAGTCGCTTCTGAAAAACTCGTTAAGGTCAAAAACTCCTTCAAACTCGCACCGGCTACTAAGACTTCCGCTGCTCCGGCGAAGGCTAAATCTGCTGCGGCGAAACCTAAGGCTGCTACCAAGCCAGCCGCCAAGGCTGCTACCAAGCCAGCCGCCAAGGCTGCTACCAAGGCTAAGGCGCCTAAGGCTAAAGCTGCAGTGAAACCTAAGGCTGTAGCGAAGCCGAAAGCTAAGAGTGTTAAGGCGGCGACGCCAGTGAAGAAGGCGGTTAAGAAGGTTCCTGTGAAGAAGCCGAAGAGCGTGAAATCGCCGGTGAAGAAGGTTAAGAAGGCGAAGAAGTGA 555 0.5009 MAATTAKPKKTTTSSKKPLSHPTYAEMITDAIVSLKERTGSSQYAITKFIEEKHKELSPTYRKLVLLHLKKLVASEKLVKVKNSFKLAPATKTSAAPAKAKSAAAKPKAATKPAAKAATKPAAKAATKAKAPKAKAAVKPKAVAKPKAKSVKAATPVKKAVKKVPVKKPKSVKSPVKKVKKAKK* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1559 184 Pfam linker histone H1 and H5 family 21 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr1g1559 184 MobiDBLite consensus disorder prediction 1 20 - -
Tpr1g1559 184 PANTHER HISTONE H1 3 184 - -
Tpr1g1559 184 Gene3D - 15 100 IPR036388 -
Tpr1g1559 184 MobiDBLite consensus disorder prediction 90 184 - -
Tpr1g1559 184 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr1g1559 184 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr1g1559 184 PRINTS Histone H5 signature 108 122 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr1g1559 184 PRINTS Histone H5 signature 145 162 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr1g1559 184 PRINTS Histone H5 signature 167 184 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr1g1559 184 CDD H15 20 93 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr1g1559 184 SUPERFAMILY "Winged helix" DNA-binding domain 17 101 IPR036390 -
Tpr1g1559 184 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr1g1559 184 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 3 184 - -
Tpr1g1559 184 MobiDBLite consensus disorder prediction 161 184 - -
Tpr1g1559 184 MobiDBLite consensus disorder prediction 1 22 - -
Tpr1g1559 184 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1559 Tpr-Chr1 14423829 14424759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1559 22 87 Single Myb Histone (SMH) Gene Family AT1G72740 34.848 5.16e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1559 K11275 - gmx:100810590 114.005